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Brain Imaging

Brain Imaging

Brain imaging technologies provide critical insights into both the structure and function of the human brain, enabling medical professionals and researchers to diagnose, study, and treat neurological disorders or psychiatric disorders more effectively.
These technologies include computerized axial tomography (CAT or CT scans), positron-emission tomography (PET scans), magnetic resonance imaging (MRI), functional magnetic resonance imaging (fMRI), and Transcranial Magnetic...

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Related Experiment Video

Updated: Jun 26, 2025

Whole-Brain 3D Activation and Functional Connectivity Mapping in Mice using Transcranial Functional Ultrasound Imaging

Whole-Brain 3D Activation and Functional Connectivity Mapping in Mice using Transcranial Functional Ultrasound Imaging

Published on: February 24, 2021

The ANTsX Ecosystem for Mapping the Mouse Brain.

Nicholas James Tustison, Min Chen, Fae N Kronman

Biorxiv : the Preprint Server for Biology

|May 15, 2024

Summary

This summary is machine-generated.

This study introduces the Advanced Normalization Tools Ecosystem (ANTsX), an open-source software for precision spatial mapping of the mouse brain. ANTsX facilitates detailed gene expression analysis and structural measurements, aiding in understanding brain organization and function.

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A Micro-CT-based Method for Characterizing Lesions and Locating Electrodes in Small Animal Brains

A Micro-CT-based Method for Characterizing Lesions and Locating Electrodes in Small Animal Brains

Published on: November 8, 2018

Related Experiment Videos

Last Updated: Jun 26, 2025

Whole-Brain 3D Activation and Functional Connectivity Mapping in Mice using Transcranial Functional Ultrasound Imaging

Whole-Brain 3D Activation and Functional Connectivity Mapping in Mice using Transcranial Functional Ultrasound Imaging

Published on: February 24, 2021

Neurovascular Network Explorer 2.0: A Simple Tool for Exploring and Sharing a Database of Optogenetically-evoked Vasomotion in Mouse Cortex In Vivo

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Published on: May 4, 2018

A Micro-CT-based Method for Characterizing Lesions and Locating Electrodes in Small Animal Brains

A Micro-CT-based Method for Characterizing Lesions and Locating Electrodes in Small Animal Brains

Published on: November 8, 2018

Area of Science:

Neuroscience
Bioinformatics
Medical Imaging

Background:

Studying spatial gene expression in the mouse brain requires standardized anatomical frameworks like the Allen Common Coordinate Framework (AllenCCFv3).
Accurate spatial mapping is crucial for understanding gene-brain structure-function relationships.
Existing tools may not fully address the complexities of high-resolution brain imaging and mapping.

Conclusions:

ANTsX provides a robust, open-source framework for advanced mouse brain spatial mapping and analysis.
The developed workflows enhance the accuracy and scope of neuroimaging studies.
ANTsX supports tailored brain parcellations and quantitative morphological analysis, advancing comparative neuroscience research.