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  1. Home
  2. The Complete Annotated Plastome Sequences Of Six Genera In The Tropical Woody Polygonaceae.
  1. Home
  2. The Complete Annotated Plastome Sequences Of Six Genera In The Tropical Woody Polygonaceae.

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The complete annotated plastome sequences of six genera in the tropical woody Polygonaceae.

Janelle M Burke1, Daniel M Koenemann2,3

  • 1Dept. of Biology, Howard University, Washington, District of Columbia, USA.

BMC Plant Biology
|May 17, 2024

View abstract on PubMed

Summary
This summary is machine-generated.

This study presents the first complete chloroplast genomes from six tropical, woody Polygonaceae genera. These findings expand genetic knowledge of the family and reveal typical plastome features with variations in specific genes and regions.

Keywords:
CHLOROBOXGeSeqGetOrganelleIlluminaNeotropicstRNAscan-SE

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Area of Science:

  • Plant genomics
  • Molecular evolution
  • Phylogenetics

Background:

  • The Polygonaceae family includes temperate herbaceous plants and tropical woody species.
  • Previous full-genome sequencing efforts have focused on temperate Polygonaceae.
  • Tropical woody lineages within Polygonaceae remain underrepresented in genomic studies.

Purpose of the Study:

  • To increase the breadth of genetic knowledge of the Polygonaceae family.
  • To present six fully assembled and annotated chloroplast genomes from tropical, woody Polygonaceae genera.
  • To provide new genomic resources for understudied genera and species.

Main Methods:

  • Whole-genome sequencing of six tropical Polygonaceae species.
  • Bioinformatic assembly and annotation of chloroplast genomes (plastomes).
  • Comparative analysis of plastome features and phylogenetic placement.
  • Main Results:

    • First publicly available plastomes for genera Podopterus, Gymnopodium, and Neomillspaughia.
    • First assembled plastomes for Coccoloba rugosa, Ruprechtia coriacea, and Triplaris cumingiana.
    • Plastomes are typical in size and features for the family, with variation in ndh genes and SSC region; inverted repeats are conserved.
    • Phylogenetic analysis resolved sequences within the Eriogonoideae subfamily.

    Conclusions:

    • The six tropical woody Polygonaceae plastomes are typical for the family.
    • The new plastome assembly for Ruprechtia coriacea raises questions about previous R. albida plastome data.
    • This study provides valuable genomic data for tropical Polygonaceae diversity.