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Updated: Jun 25, 2025

Measuring Single-Cell Mitochondrial DNA Copy Number and Heteroplasmy Using Digital Droplet Polymerase Chain Reaction
Published on: July 12, 2022
Exploring mitochondrial DNA copy number in circulating cell-free DNA and extracellular vesicles across cardiovascular
Chiara Rucci1,2, Gaia de Simone1,2, Saniya Salathia3
1School of Advanced Studies, University of Camerino, Camerino, Italy.
Insights
Mitochondrial DNA copy number (mtDNAcn) in extracellular vesicles (EVs) was higher in cardiovascular disease (CVD) patients. This pilot study suggests EVs may play a role in CVD, but mtDNAcn did not predict heart attacks.
Area of Science:
- Cardiovascular Research
- Mitochondrial Genetics
- Biomarker Discovery
Background:
- Cardiovascular disease (CVD) is a major cause of death, and predicting it remains challenging.
- Altered mitochondrial DNA copy number (mtDNAcn) in blood is linked to CVD.
- Circulating mitochondrial DNA (mtDNA) may promote inflammation, a key factor in CVD development.
Purpose of the Study:
- To investigate if mtDNAcn levels in buffy coat DNA (BC-mtDNA), circulating cell-free DNA (cf-mtDNA), or plasma extracellular vesicle DNA (EV-mtDNA) differ in CVD patients.
- To determine if these mtDNAcn levels can predict future heart attacks.
- To explore the potential role of EVs in CVD pathogenesis.
Main Methods:
- Quantified mtDNAcn in BC-mtDNA, cf-mtDNA, and EV-mtDNA from 144 participants (50 CVD, 94 healthy) from the LifeLines Biobank.
- Monitored new cardiovascular events over 6 years.
- Characterized extracellular vesicles (EVs) using Dynamic Light Scattering.
Main Results:
- No significant difference in BC-mtDNAcn or cf-mtDNAcn between CVD patients and healthy controls.
- Significantly higher EV-mtDNAcn observed in individuals with a history of CVD compared to controls.
- mtDNAcn levels did not predict CVD onset or heart attack incidence.
Conclusions:
- Increased EV-mtDNAcn in CVD patients suggests a potential pathophysiological role for EVs in CVD.
- Further research is warranted to elucidate the role of EV-mtDNAcn in inflammation and CVD.
- mtDNAcn in EVs may serve as a novel indicator for CVD, distinct from BC-mtDNAcn and cf-mtDNAcn.
Abstract:
Cardiovascular disease (CVD) is a leading global cause of mortality, difficult to predict in advance. Evidence indicates that the copy number of mitochondrial DNA (mtDNAcn) in blood is altered in individuals with CVD. MtDNA released into circulation may act as a mediator of inflammation, a recognized factor in the development of CVD, in the long distance. This pilot study aims to test if levels of mtDNAcn in buffy coat DNA (BC-mtDNA), in circulating cellfree DNA (cf-mtDNA), or in DNA extracted from plasma extracellular vesicles (EV-mtDNA) are altered in CVD patients and if they can predict heart attack in advance. A group of 144 people with different CVD statuses (50 that had CVD, 94 healthy) was selected from the LifeLines Biobank according to the incidence of new cardiovascular event monitored in 6 years (50 among controls had heart attack after the basal assessment). MtDNAcn was quantified in total cf-DNA and EV-DNA from plasma as well as in buffy coat. EVs have been characterized by their size, polydispersity index, count rate, and zeta potential, by Dynamic Light Scattering. BC-mtDNAcn and cf-mtDNAcn were not different between CVD patients and healthy subjects. EVs carried higher mtDNAcn in subject with a previous history of CVD than controls, also adjusting the analysis for the EVs derived count rate. Despite mtDNAcn was not able to predict CVD in advance, the detection of increased EV-mtDNAcn in CVD patients in this pilot study suggests the need for further investigations to determine its pathophysiological role in inflammation.
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