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Updated: Jun 25, 2025
Segmentation and Linear Measurement for Body Composition Analysis using Slice-O-Matic and Horos
Published on: March 21, 2021
Development and validation of a reliable method for automated measurements of psoas muscle volume in CT scans using
Woorim Choi1, Chul-Ho Kim2, Hyein Yoo1
1Biomedical Research Center, Asan Medical Center, Songpa-gu, Seoul, Republic of Korea.
Objectives:
We aimed to develop an automated method for measuring the volume of the psoas muscle using CT to aid sarcopenia research efficiently.
Methods:
We used a data set comprising the CT scans of 520 participants who underwent health check-ups at a health promotion centre. We developed a psoas muscle segmentation model using deep learning in a three-step process based on the nnU-Net method. The automated segmentation method was evaluated for accuracy, reliability, and time required for the measurement.
Results:
The Dice similarity coefficient was used to compare the manual segmentation with automated segmentation; an average Dice score of 0.927 ± 0.019 was obtained, with no critical outliers. Our automated segmentation system had an average measurement time of 2 min 20 s ± 20 s, which was 48 times shorter than that of the manual measurement method (111 min 6 s ± 25 min 25 s).
Conclusion:
We have successfully developed an automated segmentation method to measure the psoas muscle volume that ensures consistent and unbiased estimates across a wide range of CT images.
