Related Experiment Video
Updated: Jun 25, 2025
Transcriptomic Analysis of C. elegans RNA Sequencing Data Through the Tuxedo Suite on the Galaxy Project
Published on: April 8, 2017
The Caenorhabditis RNA-seq Browser: a web-based application for on-demand analysis of publicly available
Damia Akimori1,2, LaDeana W Hillier3, Astra S Bryant4
1Department of Microbiology, Immunology, and Molecular Genetics, University of California, Los Angeles, Los Angeles, California, United States.
Abstract:
The Caenorhabditis RNA-seq Browser is an open-source Shiny web app that enables on-demand visualization and quantification of bulk RNA-sequencing data for five Caenorhabditis species: C. elegans , C. briggsae , C. brenneri , C. japonica , and C. remanei . The app is designed to allow researchers without previous coding experience to interactively explore publicly available Caenorhabditis RNA-sequencing data. Key app features include the ability to plot gene expression across life stages for user-specified gene sets, and modules for performing differential gene expression analyses. The Caenorhabditis RNA-seq Browser can be accessed online via shinyapps.io or can be installed locally in R from a GitHub repository.
