Cryo-EM structure of I domain-containing integrin αEβ7
Hiroaki Akasaka1, Dan Sato2, Wataru Shihoya1
1Department of Biological Sciences, Graduate School of Science, The University of Tokyo, Bunkyo, Tokyo, 113-0033, Japan.
Biochemical and Biophysical Research Communications
|May 23, 2024
Summary
We determined the cryo-EM structure of integrin αEβ7, a key immune cell receptor and drug target for inflammatory bowel disease. This structure reveals unique ligand-binding domain arrangements, aiding future IBD drug design.
Area of Science:
- Structural biology
- Immunology
- Molecular medicine
Background:
- Integrins are crucial transmembrane receptors mediating cell adhesion and signaling.
- Integrin dysfunction is linked to diseases like cancer and immune disorders, making them therapeutic targets.
- Integrin αEβ7 is vital in immune responses and a target for inflammatory bowel disease (IBD).
Purpose of the Study:
- To determine the high-resolution cryo-electron microscopy (cryo-EM) structure of full-length human integrin αEβ7.
- To elucidate the structural basis of ligand binding and activation mechanisms.
- To provide structural insights for developing novel therapeutics for IBD.
Main Methods:
- Cryo-electron microscopy (cryo-EM) was employed to resolve the structure of integrin αEβ7.
- 3D reconstruction and model building were performed to analyze the molecular architecture.
- Structural analysis focused on the ligand-binding α-I domain and its interaction with the headpiece.
Main Results:
- The cryo-EM structure revealed integrin αEβ7 in a half-bent conformation, an intermediate state.
- The ligand-binding α-I domain was observed to cover the headpiece domain in a unique spatial arrangement.
- This conformation provides insights into the regulation of integrin activity and ligand recognition.
Conclusions:
- The determined structure offers a detailed molecular understanding of integrin αEβ7.
- Structural information facilitates the rational design of drugs targeting IBD by modulating integrin αEβ7 function.
- This work lays the foundation for structure-based drug discovery for inflammatory and immune-related diseases.
Related Concept Videos
Integrins
3.9K
Animal and protozoan cells do not have cell walls to help maintain shape and provide structural stability. Instead, these eukaryotic cells secrete a sticky mass of carbohydrates and proteins into the spaces between adjacent cells. This network of proteins and molecules is called an extracellular matrix or ECM.
Some ECM proteins assemble into a basement membrane to which the remaining components adhere. Proteoglycans typically form the bulk of the ECM while fibrous proteins, like collagen,...
Some ECM proteins assemble into a basement membrane to which the remaining components adhere. Proteoglycans typically form the bulk of the ECM while fibrous proteins, like collagen,...
3.9K
Activation of Integrins
3.4K
Integrins bind ligands and transmit information from outside the cell to inside or vice-versa through an "outside-in signaling" or "inside-out signaling."
In "outside-in signaling," external factors in the extracellular space bind to exposed ligand binding sites on integrins. This causes the inactive protein to undergo a conformational change to become active. Integrins are often clustered on the cell membrane. Repetitive and regularly spaced ligand binding...
In "outside-in signaling," external factors in the extracellular space bind to exposed ligand binding sites on integrins. This causes the inactive protein to undergo a conformational change to become active. Integrins are often clustered on the cell membrane. Repetitive and regularly spaced ligand binding...
3.4K
Structure of Cadherins
3.3K
The cadherins were one of the first cell adhesion molecules discovered; the term “cadherins” is based on their calcium-dependent adhering properties. The first cadherins discovered on the epithelial, neuronal, and placental cells were named E-cadherin, P-cadherin, and N-cadherin, respectively. These classical cadherins share sequence and structural similarities. Other cadherins, including those involved in cell signaling, are grouped into non-classical cadherins. This...
3.3K
Cryo-electron Microscopy
3.3K
Conventional electron microscopy (EM) involves dehydration, fixation, and staining of biological samples, which distorts the native state of biological molecules and results in several artifacts. Also, the high-energy electron beam damages the sample and makes it difficult to obtain high-resolution images. These issues can be addressed using cryo-EM, which uses frozen samples and gentler electron beams. The technique was developed by Jacques Dubochet, Joachim Frank, and Richard Henderson, for...
3.3K
Immunoglobulin-like Cell Adhesion Molecules
3.2K
Immunoglobulin-like cell adhesion molecules or Ig-CAMs are a versatile group of cell surface glycoproteins belonging to the immunoglobulin protein superfamily. Ig-CAMs possess the characteristic immunoglobulin protein domains and other domains such as the fibronectin type III domain. The Ig domains are glycosylated to varying degrees in different Ig-CAMs.
Ig-CAMs exhibit either homophilic binding (to other Ig-CAMs) or heterophilic binding (to other ligands such as integrins). While most Ig-CAMs...
Ig-CAMs exhibit either homophilic binding (to other Ig-CAMs) or heterophilic binding (to other ligands such as integrins). While most Ig-CAMs...
3.2K
Mechanisms of Membrane Domain Formation
3.0K
Different physical properties of lipids and proteins allow them to localize and form distinct islands or domains in the membrane. Some membrane domains are formed due to protein-protein interactions, whereas others are formed due to the presence of specific lipids such as sphingolipids and sterols—for example, large proteins, such as bacteriorhodopsin, aggregate and create distinct domains.
Another mechanism for membrane domain formation involves membrane proteins interacting with...
Another mechanism for membrane domain formation involves membrane proteins interacting with...
3.0K


