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Best practices for genetic and genomic data archiving.
Deborah M Leigh1, Amy G Vandergast2, Margaret E Hunter3
1Swiss Federal Research Institute WSL, Birmensdorf, Switzerland. deborah.leigh@wsl.ch.
Nature Ecology & Evolution
|May 24, 2024
Summary
Improving genetic data archiving is crucial for scientific advancement. Making genetic and genomic datasets FAIR (findable, accessible, interoperable, reusable) compliant will enable broader data reuse and discovery.
Area of Science:
- Genomics
- Bioinformatics
- Data Science
Background:
- Genetic and genomic data are collected for diverse scientific and applied uses.
- Current data archiving practices are non-standardized, hindering dataset reuse beyond the generating authors.
- Lack of contextual metadata further complicates the accessibility and utility of archived genetic information.
Purpose of the Study:
- To identify challenges in existing genetic and genomic data archives.
- To propose best practices for effective genetic and genomic data archiving.
- To highlight institutional and publisher roles in enhancing data archiving.
Main Methods:
- Review of current genetic and genomic data archiving practices.
- Analysis of challenges leading to limited data reuse.
- Discussion of FAIR data principles (findable, accessible, interoperable, reusable) in the context of macrogenetics.
Main Results:
- Genetic and genomic dataset reuse is uncommon due to poor archiving and metadata.
- The field of macrogenetics demonstrates the potential of accessible, FAIR-compliant data.
- Lack of formal data management training in ecology and evolution contributes to the issue.
Conclusions:
- Implementing standardized archiving practices and comprehensive metadata is essential for maximizing the value of genetic and genomic data.
- Research institutions and publishers must take proactive steps to improve data archiving standards.
- Adoption of FAIR principles will unlock new research avenues through enhanced data accessibility and reusability.
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