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Updated: Jun 25, 2025

A Bioinformatics Pipeline for Investigating Molecular Evolution and Gene Expression using RNA-seq
Published on: May 28, 2021
Different Evolutionary Trends of Galloanseres: Mitogenomics Analysis
Shengyang Zhou1, Xibao Wang1, Lidong Wang1
1College of Life Sciences, Qufu Normal University, Jingxuan West Street No. 57, Qufu 273165, China.
The study reveals distinct evolutionary paths for landfowl (Galliformes) and waterfowl (Anseriformes) driven by their unique energy needs. Mitochondrial protein-coding genes in these bird orders primarily show purifying selection, indicating conserved function.
Area of Science:
- Evolutionary Biology
- Genomics
- Ornithology
Background:
- Galloanseres, comprising Galliformes (landfowl) and Anseriformes (waterfowl), display divergent evolutionary trajectories.
- Mitochondria are crucial for cellular energy production and play a significant role in organismal evolution and adaptation.
- Understanding mitogenome evolution provides insights into species diversification and adaptation.
Purpose of the Study:
- To assemble and analyze the complete mitogenome sequences of two *Aythya* species (*Aythya baeri* and *Aythya marila*).
- To construct a phylogenetic tree and infer divergence times for 142 species within Galloanseres.
- To investigate evolutionary pressures and rates acting on mitochondrial protein-coding genes (PCGs) in Galliformes and Anseriformes.
Main Methods:
- Whole mitogenome sequencing of *Aythya baeri* and *Aythya marila*.
- Phylogenetic analysis and divergence time estimation using a dataset of 142 Galloanseres species.
- Selective pressure analysis using free-ratio and CmC models on mitochondrial PCGs.
Main Results:
- The divergence between Galliformes and Anseriformes occurred approximately 79.62 million years ago, with rapid diversification post-Middle Miocene (~13.82 Mya).
- Mitochondrial PCGs in Galloanseres are predominantly under purifying selection.
- Specific genes (*COX1*, *COX3*) exhibit lower evolutionary rates, while others (*ND2*, *ND6*) show faster rates; Anseriformes PCGs generally have stronger selective constraints.
Conclusions:
- Distinct evolutionary trends and differing energy requirements between Galliformes and Anseriformes shape their respective mitogenome evolutionary patterns.
- Mitochondrial genome evolution is influenced by the ecological niches and metabolic demands of avian lineages.
- The findings contribute to a deeper understanding of avian evolutionary history and adaptation at the molecular level.
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