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Updated: Jun 25, 2025

A Method for Screening and Validation of Resistant Mutations Against Kinase Inhibitors
Published on: December 7, 2014
Discovery and Anticancer Screening of Novel Oxindole-Based Derivative Bearing Pyridyl Group as Potent and Selective
Aya Soudi1, Onur Bender2, Ismail Celik3,4
1Department of Medicinal Chemistry, Faculty of Pharmacy, Minia University, Minia 61519, Egypt.
Abstract:
Protein kinases regulate cellular activities and make up over 60% of oncoproteins and proto-oncoproteins. Among these kinases, FLT3 is a member of class III receptor tyrosine kinase family which is abundantly expressed in individuals with acute leukemia. Our previous oxindole-based hit has a particular affinity toward FLT3 (IC50 = 2.49 μM) and has demonstrated selectivity towards FLT3 ITD-mutated MV4-11 AML cells, with an IC50 of 4.3 μM. By utilizing the scaffold of the previous hit, sixteen new compounds were synthesized and screened against NCI-60 human cancer cell lines. This leads to the discovery of a potent antiproliferative compound, namely 5l, with an average GI50 value against leukemia and colon cancer subpanels equalling 3.39 and 5.97 µM, respectively. Screening against a specific set of 10 kinases that are associated with carcinogenesis indicates that compound 5l has a potent FLT3 inhibition (IC50 = 36.21 ± 1.07 nM). Remarkably, compound 5l was three times more effective as a CDK2 inhibitor (IC50 = 8.17 ± 0.32 nM) compared to sunitinib (IC50 = 27.90 ± 1.80 nM). Compound 5l was further analyzed by means of docking and molecular dynamics simulation for CDK2 and FLT3 active sites which provided a rational for the observed strong inhibition of kinases. These results suggest a novel structural scaffold candidate that simultaneously inhibits CDK2 and FLT3 and gives encouragement for further development as a potential therapeutic for leukemia and colon cancer.
Insights
Researchers developed a new compound, 5l, that inhibits both FLT3 and CDK2 kinases. This novel dual inhibitor shows promise as a potential therapeutic for leukemia and colon cancer.
Area of Science:
- Medicinal Chemistry
- Cancer Biology
- Molecular Pharmacology
Background:
- Protein kinases are crucial regulators of cellular functions, with over 60% implicated in cancer as oncoproteins.
- FLT3, a class III receptor tyrosine kinase, is frequently overexpressed in acute leukemia.
- Previous research identified an oxindole-based compound with FLT3 inhibitory activity.
Purpose of the Study:
- To synthesize and evaluate novel oxindole-based compounds for antiproliferative activity.
- To discover potent inhibitors of FLT3 and other cancer-associated kinases.
- To explore novel therapeutic candidates for leukemia and colon cancer.
Main Methods:
- Synthesis of sixteen new oxindole-based compounds.
- Screening against NCI-60 human cancer cell lines for antiproliferative effects.
- Kinase inhibition assays against a panel of 10 carcinogenesis-associated kinases.
- Molecular docking and dynamics simulations for CDK2 and FLT3 active sites.
Main Results:
- Compound 5l demonstrated potent antiproliferative activity against leukemia (GI50 = 3.39 µM) and colon cancer (GI50 = 5.97 µM) cell lines.
- Compound 5l potently inhibited FLT3 (IC50 = 36.21 nM) and CDK2 (IC50 = 8.17 nM).
- Compound 5l exhibited superior CDK2 inhibition compared to sunitinib.
- Molecular modeling provided insights into the binding interactions of compound 5l with CDK2 and FLT3.
Conclusions:
- Compound 5l represents a novel structural scaffold with dual inhibitory activity against CDK2 and FLT3.
- The findings support the further development of compound 5l as a potential therapeutic agent for leukemia and colon cancer.
- Simultaneous inhibition of CDK2 and FLT3 may offer a new therapeutic strategy for specific cancers.
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