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Updated: Jun 25, 2025

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Multiplexed Analysis of Retinal Gene Expression and Chromatin Accessibility Using scRNA-Seq and scATAC-Seq
Published on: March 12, 2021
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Sex-specific single cell-level transcriptomic signatures of Rett syndrome disease progression.
Osman Sharifi1,2,3, Viktoria Haghani1,2,3, Kari E Neier1,2,3
1Medical Microbiology and Immunology, School of Medicine, University of California, Davis, CA 95616.
Biorxiv : the Preprint Server for Biology
|May 27, 2024
Summary
Rett syndrome (RTT) is a neurodevelopmental disorder affecting females. This study reveals how MECP2 mutations impact gene expression differently in female and male mice, offering insights into RTT progression and potential treatments.
Area of Science:
- Neuroscience
- Genetics
- Developmental Biology
Background:
- Rett syndrome (RTT) is a female neurodevelopmental disorder caused by heterozygous MECP2 mutations.
- X-chromosome inactivation (XCI) typically protects females from X-linked mutations, but RTT pathogenesis in females remains poorly understood.
- RTT girls exhibit regression after a period of typical development.
Approach:
- Longitudinal single-nucleus RNA sequencing (snRNA-seq) was performed on the cerebral cortex of a Mecp2e1 mutant mouse model of RTT.
- Transcriptional effects were analyzed based on cell type, mosaicism, and sex.
- Differential gene expression and pathway enrichment were investigated across disease progression.
Key Points:
- Mutant females exhibited 6x more differentially expressed genes (DEGs) than mutant males, with female DEGs appearing before symptom onset.
- Female DEGs were enriched for homeostatic gene pathways in specific cell types over time and correlated with disease phenotypes.
- Non-cell-autonomous effects were dynamic in mutant females, with wild-type-expressing cells potentially normalizing transcriptional homeostasis.
Conclusions:
- Sex-specific transcriptional changes are crucial in RTT pathogenesis.
- Understanding cell type-specific and dynamic gene expression patterns is key to RTT progression.
- These findings enhance comprehension of RTT and may inform therapeutic strategies.

