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Updated: Jun 25, 2025

Microfluidic Mixers for Studying Protein Folding
Published on: April 10, 2012
Protein folding as a jamming transition
Alex T Grigas1,2, Zhuoyi Liu3,2, Jack A Logan3
1Graduate Program in Computational Biology and Bioinformatics, Yale University, New Haven, Connecticut, 06520, USA.
Abstract:
Proteins fold to a specific functional conformation with a densely packed hydrophobic core that controls their stability. We develop a geometric, yet all-atom model for proteins that explains the universal core packing fraction of found in experimental measurements. We show that as the hydrophobic interactions increase relative to the temperature, a novel jamming transition occurs when the core packing fraction exceeds . The model also recapitulates the global structure of proteins since it can accurately refold to native-like structures from partially unfolded states.
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