Network dynamics and therapeutic aspects of mRNA and protein markers with the recurrence sites of pancreatic cancer
- Animesh Acharjee 1,2,3,4, Daniella Okyere 1, Dipanwita Nath 1, Shruti Nagar 5, Georgios V Gkoutos 1,2,3,4
- Animesh Acharjee 1,2,3,4, Daniella Okyere 1, Dipanwita Nath 1
- 1Institute of Cancer and Genomic Sciences, University of Birmingham, Birmingham, United Kingdom.
- 2MRC Health Data Research UK (HDR UK), Birmingham, United Kingdom.
- 3Institute of Translational Medicine, University Hospitals Birmingham NHS, Foundation Trust, B15 2TT, United Kingdom.
- 4Centre for Health Data Research, University of Birmingham, B15 2TT, United Kingdom.
- 5Eureka Tutorials, Muzaffarnagar, U.P., 251201, India.
- 0Institute of Cancer and Genomic Sciences, University of Birmingham, Birmingham, United Kingdom.
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View abstract on PubMed
Summary
This summary is machine-generated.This study reveals key molecular links driving pancreatic cancer recurrence. Understanding these associations aids in developing precision medicine and personalized surveillance for patients.
Area Of Science
- Oncology
- Molecular Biology
- Bioinformatics
Background
- Pancreatic ductal adenocarcinoma (PDAC) presents late with poor outcomes.
- PDAC recurrence is a significant clinical challenge.
- Immune pathways and tumor microenvironment inflammation are linked to PDAC recurrence patterns.
Purpose Of The Study
- To identify stable molecular associations underlying PDAC recurrence using multi-omics integration.
- To uncover novel molecular targets for PDAC recurrence through integrative analytics.
- To understand the multi-layer disease mechanisms contributing to PDAC recurrence.
Main Methods
- Utilized spatial transcriptome and proteome datasets.
- Applied univariate analysis, Spearman partial correlation, and Machine Learning methods (regularised canonical correlation analysis, sparse partial least squares).
- Performed simultaneous feature selection and network construction for identified associations.
Main Results
- Identified stable gene and protein associations across multiple PDAC recurrence groups.
- Revealed novel molecular associations through integrative analytics.
- Constructed networks illustrating reported and new stable associations.
Conclusions
- Findings enhance understanding of PDAC recurrence mechanisms.
- Identified potential novel targets for clinical studies in precision medicine.
- May inform personalized surveillance strategies for PDAC recurrence.
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