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Published on: April 12, 2019
Clinical Implications and Molecular Features of Extracellular Matrix Networks in Soft Tissue Sarcomas
Valeriya Pankova1, Lukas Krasny1, William Kerrison1
1Division of Molecular Pathology, The Institute of Cancer Research, London, United Kingdom.
Purpose:
The landscape of extracellular matrix (ECM) alterations in soft tissue sarcomas (STS) remains poorly characterized. We aimed to investigate the tumor ECM and adhesion signaling networks present in STS and their clinical implications.
Experimental Design:
Proteomic and clinical data from 321 patients across 11 histological subtypes were analyzed to define ECM and integrin adhesion networks. Subgroup analysis was performed in leiomyosarcomas (LMS), dedifferentiated liposarcomas (DDLPS), and undifferentiated pleomorphic sarcomas (UPS).
Results:
This analysis defined subtype-specific ECM profiles including enrichment of basement membrane proteins in LMS and ECM proteases in UPS. Across the cohort, we identified three distinct coregulated ECM networks which are associated with tumor malignancy grade and histological subtype. Comparative analysis of LMS cell line and patient proteomic data identified the lymphocyte cytosolic protein 1 cytoskeletal protein as a prognostic factor in LMS. Characterization of ECM network events in DDLPS revealed three subtypes with distinct oncogenic signaling pathways and survival outcomes. Evaluation of the DDLPS subtype with the poorest prognosis nominates ECM remodeling proteins as candidate antistromal therapeutic targets. Finally, we define a proteoglycan signature that is an independent prognostic factor for overall survival in DDLPS and UPS.
Conclusions:
STS comprise heterogeneous ECM signaling networks and matrix-specific features that have utility for risk stratification and therapy selection, which could in future guide precision medicine in these rare cancers.
Insights
Soft tissue sarcomas (STS) exhibit diverse extracellular matrix (ECM) networks. Identifying these ECM features aids in risk stratification and selecting targeted therapies for precision medicine in rare cancers.
Area of Science:
- Oncology
- Molecular Biology
- Proteomics
Background:
- Extracellular matrix (ECM) alterations in soft tissue sarcomas (STS) are not well understood.
- Investigating tumor ECM and adhesion signaling networks is crucial for understanding STS.
Purpose of the Study:
- To investigate the tumor ECM and adhesion signaling networks in STS.
- To explore the clinical implications of these networks.
Main Methods:
- Proteomic and clinical data from 321 STS patients across 11 subtypes were analyzed.
- Subgroup analyses were conducted for leiomyosarcomas (LMS), dedifferentiated liposarcomas (DDLPS), and undifferentiated pleomorphic sarcomas (UPS).
Main Results:
- Subtype-specific ECM profiles were identified, with basement membrane proteins in LMS and ECM proteases in UPS.
- Three coregulated ECM networks associated with tumor grade and subtype were discovered.
- A proteoglycan signature was found to be an independent prognostic factor for overall survival in DDLPS and UPS.
Conclusions:
- STS possess heterogeneous ECM signaling networks and matrix features.
- These features can be utilized for risk stratification and therapy selection.
- Findings may guide precision medicine approaches for rare STS.
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