Identification of pleiotropic and specific therapeutic targets for cardio-cerebral diseases: A large-scale proteome-wide mendelian randomization and colocalization study
Related Experiment Video
Updated: Jun 25, 2025

Determining the Likelihood of Variant Pathogenicity Using Amino Acid-level Signal-to-Noise Analysis of Genetic Variation
Published on: January 16, 2019
Yanchen Zhu1, Yahui Wang1, Zhaorui Cui1
1Cardiology Department, Dongfang Hospital, Beijing University of Chinese Medicine, Beijing, China.
Insights
This study identified 46 robust therapeutic targets for cardio-cerebral diseases using Mendelian randomization and colocalization analyses. Six highly recommended protein-disease pairs offer promising avenues for novel drug development.
Area of Science:
- Genetics and Bioinformatics
- Cardiovascular and Neurological Diseases
- Pharmacogenomics
Background:
- The cardiac-brain connection underlies numerous cardio-cerebral diseases.
- Current therapeutic strategies for these conditions remain limited.
- Identifying novel therapeutic targets is crucial for disease management.
Purpose of the Study:
- To identify pleiotropic and specific therapeutic targets for cardio-cerebral diseases.
- To leverage Mendelian randomization and colocalization analyses for target discovery.
- To facilitate the development of effective preventive or therapeutic drugs.
Main Methods:
- Utilized two large protein quantitative trait loci (pQTL) studies for discovery and replication.
- Employed Mendelian randomization (MR) to assess protein-disease associations.
- Performed colocalization analysis and prioritized targets based on robust evidence from discovery and replication phases.
Main Results:
- Identified 46 robust therapeutic target proteins for cardio-cerebral diseases.
- Discovered 7 pleiotropic and 39 specific therapeutic proteins.
- Highlighted 6 highly recommended protein-disease pairs, including PILRA for sick sinus syndrome and Alzheimer's disease, and GRN for Alzheimer's disease.
Conclusions:
- Successfully identified key therapeutic targets for cardio-cerebral diseases.
- The findings support the development of novel preventive and therapeutic drugs.
- Provides a foundation for precision medicine approaches in cardio-cerebral disease treatment.
Background:
The cardiac-brain connection has been identified as the basis for multiple cardio-cerebral diseases. However, effective therapeutic targets for these diseases are still limited. Therefore, this study aimed to identify pleiotropic and specific therapeutic targets for cardio-cerebral diseases using Mendelian randomization (MR) and colocalization analyses.
Methods:
This study included two large protein quantitative trait loci studies with over 4,000 plasma proteins were included in the discovery and replication cohorts, respectively. We initially used MR to estimate the associations between protein and 20 cardio-cerebral diseases. Subsequently, Colocalization analysis was employed to enhance the credibility of the results. Protein target prioritization was based solely on including highly robust significant results from both the discovery and replication phases. Lastly, the Drug-Gene Interaction Database was utilized to investigate protein-gene-drug interactions further.
Results:
A total of 46 target proteins for cardio-cerebral diseases were identified as robust in the discovery and replication phases by MR, comprising 7 pleiotropic therapeutic proteins and 39 specific target proteins. Followed by colocalization analysis and prioritization of evidence grades for target protein, 6 of these protein-disease pairs have achieved the highly recommended level. For instance, the PILRA protein presents a pleiotropic effect on sick sinus syndrome and Alzheimer's disease, whereas GRN exerts specific effects on the latter. APOL3, LRP4, and F11, on the other hand, have specific effects on cardiomyopathy and ischemic stroke, respectively.
Conclusions:
This study successfully identified important therapeutic targets for cardio-cerebral diseases, which benefits the development of preventive or therapeutic drugs.
Related Concept Videos
Genome-wide Association Studies-GWAS
GWAS does not require the identification of the target gene involved in...
Proteomics
Proteomics is the study of proteomes' function. It involves the large-scale systematic study of the proteome to denote the protein complement expressed by a genome. Scientist Mark Wilkins coined the term...
Protein Networks
These interactions can be represented through maps depicting protein-protein interaction networks, represented as nodes and edges. Nodes are circles that are representative of a protein,...

