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Updated: Jun 24, 2025

An In Vitro Protocol for Evaluating MicroRNA Levels, Functions, and Associated Target Genes in Tumor Cells
Published on: May 21, 2019
Targeting MYC effector functions in pancreatic cancer by inhibiting the ATPase RUVBL1/2
Markus Vogt1,2, Nevenka Dudvarski Stankovic1,2, Yiliam Cruz Garcia1,2
1Cancer Systems Biology Group, Chair of Biochemistry and Molecular Biology, Theodor Boveri Institute, University of Würzburg, Würzburg, Germany.
Objective:
The hallmark oncogene MYC drives the progression of most tumours, but direct inhibition of MYC by a small-molecule drug has not reached clinical testing. MYC is a transcription factor that depends on several binding partners to function. We therefore explored the possibility of targeting MYC via its interactome in pancreatic ductal adenocarcinoma (PDAC).
Design:
To identify the most suitable targets among all MYC binding partners, we constructed a targeted shRNA library and performed screens in cultured PDAC cells and tumours in mice.
Results:
Unexpectedly, many MYC binding partners were found to be important for cultured PDAC cells but dispensable in vivo. However, some were also essential for tumours in their natural environment and, among these, the ATPases RUVBL1 and RUVBL2 ranked first. Degradation of RUVBL1 by the auxin-degron system led to the arrest of cultured PDAC cells but not untransformed cells and to complete tumour regression in mice, which was preceded by immune cell infiltration. Mechanistically, RUVBL1 was required for MYC to establish oncogenic and immunoevasive gene expression identifying the RUVBL1/2 complex as a druggable vulnerability in MYC-driven cancer.
Conclusion:
One implication of our study is that PDAC cell dependencies are strongly influenced by the environment, so genetic screens should be performed in vitro and in vivo. Moreover, the auxin-degron system can be applied in a PDAC model, allowing target validation in living mice. Finally, by revealing the nuclear functions of the RUVBL1/2 complex, our study presents a pharmaceutical strategy to render pancreatic cancers potentially susceptible to immunotherapy.
Insights
Targeting MYC’s interactome, researchers identified RUVBL1 and RUVBL2 as key vulnerabilities in pancreatic ductal adenocarcinoma (PDAC). Inhibiting RUVBL1 caused tumor regression in mice, suggesting a new therapeutic strategy for MYC-driven cancers.
Area of Science:
- Oncology
- Molecular Biology
- Cancer Research
Background:
- The MYC oncogene is crucial for most tumor progressions but remains undruggable by small molecules.
- Targeting MYC's protein interactions (interactome) offers an alternative strategy for cancer therapy.
- Pancreatic ductal adenocarcinoma (PDAC) is a highly aggressive cancer with limited treatment options.
Purpose of the Study:
- To identify druggable targets within the MYC interactome for PDAC treatment.
- To investigate the role of MYC binding partners in PDAC progression in vitro and in vivo.
- To explore RUVBL1 and RUVBL2 as potential therapeutic targets in MYC-driven cancers.
Main Methods:
- Construction of a targeted shRNA library for screening MYC binding partners.
- Performing genetic screens in cultured PDAC cells and in mouse tumor models.
- Utilizing the auxin-degron system for targeted protein degradation of RUVBL1 in vivo.
Main Results:
- Many MYC binding partners essential in vitro were dispensable in vivo for PDAC cells.
- The ATPases RUVBL1 and RUVBL2 were identified as essential MYC binding partners in vivo.
- RUVBL1 degradation led to PDAC cell cycle arrest, complete tumor regression in mice, and increased immune infiltration.
- RUVBL1 is critical for MYC-mediated oncogenic and immunoevasive gene expression.
Conclusions:
- PDAC cell dependencies are significantly influenced by the tumor microenvironment, necessitating in vitro and in vivo screening.
- The auxin-degron system is a viable tool for target validation in living mouse models.
- The RUVBL1/2 complex represents a druggable vulnerability, offering a novel pharmaceutical strategy to enhance immunotherapy efficacy in pancreatic cancer.
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