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Updated: Jun 24, 2025

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Enhancing winter wheat prediction with genomics, phenomics and environmental data.

Osval A Montesinos-López1, Andrew W Herr2, José Crossa3,4

  • 1Facultad de Telemática, Universidad de Colima, Colima, 28040, México.

BMC Genomics
|May 31, 2024
PubMed
Summary
This summary is machine-generated.

Integrating environmental data significantly boosts genomic selection accuracy in wheat breeding. This approach improves prediction across diverse environments, enhancing overall selection efficiency for plant breeding programs.

Keywords:
Environmental informationGenomic predictionGenomicsIntegrating additional inputsMulti-environment trailsPhenomics

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Area of Science:

  • Agricultural Science
  • Plant Breeding
  • Genetics

Background:

  • Genomic selection (GS) efficiency is limited in multi-environment prediction due to genotype by environment interactions.
  • Improving prediction accuracy requires integrating diverse data types like phenomics, environmental, and omics data.

Purpose of the Study:

  • To evaluate the impact of incorporating environmental information into prediction models.
  • To assess the improvement in prediction accuracy for soft white winter wheat across multiple environments.

Main Methods:

  • Utilized five datasets of soft white winter wheat.
  • Integrated genomic, phenomic, and environmental data into prediction models.
  • Measured prediction accuracy using normalized root mean square error (NRMSE).

Main Results:

  • Incorporating environmental information significantly improved prediction accuracy.
  • Average gain in prediction accuracy was 49.19% in terms of NRMSE across datasets.
  • Prediction accuracy gains ranged from 5.68% to 60.36% depending on the dataset.

Conclusions:

  • Environmental data integration substantially enhances prediction accuracy in multi-environment trials.
  • Plant breeding programs can improve selection efficiency by combining genomic, phenomic, and environmental data.
  • This integrated approach is crucial for effective breeding across diverse agricultural locations.