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Local environment shapes milk microbiomes while evolutionary history constrains milk macronutrients in captive
Sally L Bornbusch1,2, Hannah E Shinnerl2, Lindsey Gentry1
1Center for Conservation Genomics, Smithsonian's National Zoo and Conservation Biology Institute, Washington, DC, USA.
Environmental Microbiology
|June 3, 2024
Summary
Milk composition and its microbial communities are influenced by both the host species and the environment. Environmental factors, like housing facilities, significantly shape milk microbiomes and their functions, impacting infant development.
Area of Science:
- Comparative biology
- Microbiome research
- Primate lactation
Background:
- Milk is a vital source of nutrition and immune factors for infants.
- Milk's macronutrient and microbial composition is crucial for infant growth and microbiome colonization.
- Understanding factors influencing milk composition is key to evolutionary studies.
Purpose of the Study:
- To investigate the influence of host species and environment on milk macronutrients, microbiomes, and predicted microbial functions in cercopithecine primates.
- To determine whether milk composition varies more by host species or by housing facility.
Main Methods:
- Comparative analysis of milk samples from four cercopithecine primate species across three facilities.
- Analysis of milk macronutrients (fat, sugar, protein).
- 16S rRNA sequencing to characterize milk microbiomes and predict microbial functions.
Main Results:
- Milk macronutrients were primarily structured by host species.
- Milk microbiomes and predicted microbial functions were strongly influenced by the housing facility.
- Rhesus macaque milk microbiomes at different facilities resembled facility-mates more than conspecifics at other sites.
Conclusions:
- The environment plays a significant role in shaping milk microbiomes and their functions, potentially impacting infant health.
- Milk microbiomes may be adapted to local environmental conditions, influencing infant development across species.
- This study highlights the complex interplay between host, environment, and milk composition in primate lactation.

