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Updated: Jun 24, 2025

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A Knowledge Graph Approach to Elucidate the Role of Organellar Pathways in Disease via Biomedical Reports
Published on: October 13, 2023
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DiscoverPath: A Knowledge Refinement and Retrieval System for Interdisciplinarity on Biomedical Research.
Yu-Neng Chuang1, Guanchu Wang1, Chia-Yuan Chang2
1Rice University.
Summary
DiscoverPath is a novel knowledge graph (KG) search engine for biomedical research. It enhances article discovery by using Named Entity Recognition (NER) and part-of-speech (POS) tagging to visualize research connections.
Area of Science:
- Biomedical Research
- Information Science
- Computer Science
Background:
- Scholarly publications are growing exponentially, making efficient retrieval difficult.
- Traditional search engines struggle with interdisciplinary research and diverse terminologies.
- A need exists for advanced tools to aid researchers in discovering relevant articles.
Purpose of the Study:
- To present DiscoverPath, a knowledge graph-based search engine for biomedical research.
- To enhance user experience in discovering relevant queries and articles.
- To foster interdisciplinary knowledge exploration.
Main Methods:
- Utilized Named Entity Recognition (NER) and part-of-speech (POS) tagging to extract terms and relationships from abstracts.
- Constructed a knowledge graph (KG) from extracted information.
- Developed a focused subgraph visualization and a query recommendation system.
- Integrated an accessible Graphical User Interface (GUI) for intuitive interaction.
Main Results:
- DiscoverPath effectively extracts terminologies and relationships to build a KG.
- The system reduces information overload by presenting focused subgraphs.
- Query recommendations enable iterative refinement of search queries.
- The GUI provides intuitive visualization and detailed article information.
Conclusions:
- DiscoverPath enhances biomedical research article retrieval through KG-based search.
- The system facilitates interdisciplinary knowledge exploration by improving query and article discovery.
- DiscoverPath offers an accessible and efficient solution for navigating complex scientific literature.
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