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Updated: Jun 24, 2025

Assessing Cellular Target Engagement by SHP2 PTPN11 Phosphatase Inhibitors
Published on: July 17, 2020
Off-target autophagy inhibition by SHP2 allosteric inhibitors contributes to their antitumor activity in RAS-driven
Yiming Miao1, Yunpeng Bai1, Jinmin Miao1
1Department of Medicinal Chemistry and Molecular Pharmacology and.
Abstract:
Aberrant activation of RAS/MAPK signaling is common in cancer, and efforts to inhibit pathway components have yielded drugs with promising clinical activities. Unfortunately, treatment-provoked adaptive resistance mechanisms inevitably develop, limiting their therapeutic potential. As a central node essential for receptor tyrosine kinase-mediated RAS activation, SHP2 has emerged as an attractive cancer target. Consequently, many SHP2 allosteric inhibitors are now in clinical testing. Here we discovered a previously unrecognized off-target effect associated with SHP2 allosteric inhibitors. We found that these inhibitors accumulate in the lysosome and block autophagic flux in an SHP2-independent manner. We showed that off-target autophagy inhibition by SHP2 allosteric inhibitors contributes to their antitumor activity. We also demonstrated that SHP2 allosteric inhibitors harboring this off-target activity not only suppress oncogenic RAS signaling but also overcome drug resistance such as MAPK rebound and protective autophagy in response to RAS/MAPK pathway blockage. Finally, we exemplified a therapeutic framework that harnesses both the on- and off-target activities of SHP2 allosteric inhibitors for improved treatment of mutant RAS-driven and drug-resistant malignancies such as pancreatic and colorectal cancers.
Insights
SHP2 inhibitors unexpectedly block autophagy, enhancing their anti-cancer effects. This dual action combats RAS/MAPK signaling and resistance, offering new hope for treating cancers like pancreatic and colorectal.
Area of Science:
- Oncology
- Molecular Biology
- Drug Discovery
Background:
- Aberrant RAS/MAPK signaling drives cancer.
- SHP2 is a key target for RAS/MAPK pathway inhibition.
- Existing SHP2 inhibitors face adaptive resistance, limiting efficacy.
Purpose of the Study:
- To investigate off-target effects of SHP2 allosteric inhibitors.
- To explore the role of autophagy inhibition in SHP2 inhibitor activity.
- To develop a therapeutic strategy combining on- and off-target effects.
Main Methods:
- Analysis of SHP2 inhibitor accumulation in cancer cells.
- Assessment of autophagic flux in response to inhibitors.
- Evaluation of antitumor activity in preclinical cancer models.
- Investigation of resistance mechanisms like MAPK rebound.
Main Results:
- SHP2 inhibitors accumulate in lysosomes and inhibit autophagic flux independently of SHP2.
- This off-target autophagy inhibition contributes to antitumor activity.
- Inhibitors with this dual action overcome resistance mechanisms.
- A therapeutic framework leveraging both on- and off-target effects was demonstrated.
Conclusions:
- SHP2 allosteric inhibitors possess a previously unrecognized off-target effect on autophagy.
- This dual inhibition enhances anti-cancer efficacy and overcomes resistance.
- Harnessing both on- and off-target activities presents a promising therapeutic strategy for RAS/MAPK-driven and resistant cancers.
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