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Updated: Jun 24, 2025

Microbiota Analysis Using Two-step PCR and Next-generation 16S rRNA Gene Sequencing
Published on: October 15, 2019
Association between gut microbiota and common overlapping gastrointestinal disorders: a bidirectional two-sample
Yuhan Huang1,2, Zhen Kang1,2, Yuhan He1,2
1The Second Affiliated Hospital of Hunan University of Chinese Medicine, Changsha, Hunan, China.
This study used Mendelian randomization to explore causal links between gut bacteria and functional gastrointestinal disorders (FGIDs) like functional dyspepsia (FD) and irritable bowel syndrome (IBS), and gastroesophageal reflux disease (GERD). Specific gut microbes were found to be associated with these conditions.
Area of Science:
- Gastroenterology
- Microbiome Research
- Genetics
Background:
- Functional gastrointestinal disorders (FGIDs), including functional dyspepsia (FD) and irritable bowel syndrome (IBS), often share symptoms with gastroesophageal reflux disease (GERD).
- The gut microbiota's role in FGIDs and GERD is recognized but not fully understood.
- Establishing a causal relationship between gut microbiota and these conditions is crucial for effective diagnosis and treatment.
Purpose of the Study:
- To investigate the potential causal relationship between gut microbial composition and functional dyspepsia (FD), irritable bowel syndrome (IBS), and gastroesophageal reflux disease (GERD).
- To utilize bidirectional two-sample Mendelian randomization (MR) analysis for exploring these associations.
Main Methods:
- Genetic data for 211 gut microbial taxa were sourced from the MiBioGen consortium and the Dutch Microbiome Project.
- Genome-wide association study (GWAS) data for FD and IBS were obtained from the FinnGen consortium, and for GERD from the IEU OpenGWAS project.
- Bidirectional two-sample Mendelian randomization (MR) analysis, primarily using the inverse-variance weighted (IVW) method, with sensitivity analyses and reverse MR were performed.
Main Results:
- The analysis identified 8 gut microbial taxa associated with FD, including the genera *Lachnospiraceae NK4A136 group* and *Terrisporobacter*.
- Eight gut microbial taxa were associated with IBS, notably the family *Prevotellaceae* and species *Clostridium leptum*.
- Five gut microbial taxa were associated with GERD. Reverse MR analysis revealed associations between specific microbial taxa and FD (2), IBS (5), and GERD (21).
Conclusions:
- The study provides evidence for potential causal effects of specific gut microbial taxa on FD, IBS, and GERD.
- These findings may offer new perspectives for the clinical diagnosis and therapeutic strategies for these prevalent gastrointestinal conditions.
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