Related Experiment Video
Updated: Jun 24, 2025

RIBO-seq in Bacteria: a Sample Collection and Library Preparation Protocol for NGS Sequencing
Published on: August 7, 2021
VeloPro: A pipeline integrating Ribo-seq and AlphaFold deciphers association patterns between translation velocity
Bian Bian1,2, Toshitaka Kumagai3, Yutaka Saito1,2,4,5
1Department of Computational Biology and Medical Sciences Graduate School of Frontier Sciences, The University of Tokyo Kashiwa Japan.
Abstract:
VeloPro integrates Ribo-seq data and AlphaFold2-predicted 3D protein structure information for characterization of the association patterns between translation velocity and many protein structure features in prokaryotic and eukaryotic organisms across different taxonomical clades such as bacteria, fungi, protozoa, nematode, plants, insect, and mammals. We illustrated that association patterns between translation velocity and protein structure features differ across organisms, partially reflecting their taxonomical relationship.
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