Related Experiment Video
Updated: Jun 23, 2025

Utilizing Functional Genomics Screening to Identify Potentially Novel Drug Targets in Cancer Cell Spheroid Cultures
Published on: December 26, 2016
Therapeutic targets of formononetin for treating prostate cancer at the single-cell level
Jiawei Li1, Zhaoquan Huang2, Ping Wang3
1Department of Urology Surgery, The Second Affiliated Hospital of Guilin Medical University, Guilin Medical University, Guilin, PR China.
Abstract:
Prostate cancer is one of the serious health problems of older male, about 13% of male was affected by prostate cancer. Prostate cancer is highly heterogeneity disease with complex molecular and genetic alterations. So, targeting the gene candidates in prostate cancer in single-cell level can be a promising approach for treating prostate cancer. In the present study, we analyzed the single cell sequencing data obtained from 2 previous reports to determine the differential gene expression of prostate cancer in single-cell level. By using the network pharmacology analysis, we identified the therapeutic targets of formononetin in immune cells and tissue cells of prostate cancer. We then applied molecular docking to determine the possible direct binding of formononetin to its target proteins. Our result identified a cluster of differential gene expression in prostate cancer which can serve as novel biomarkers such as immunoglobulin kappa C for prostate cancer prognosis. The result of network pharmacology delineated the roles of formononetin's targets such CD74 and THBS1 in immune cells' function of prostate cancer. Also, formononetin targeted insulin receptor and zinc-alpha-2-glycoprotein which play important roles in metabolisms of tissue cells of prostate cancer. The result of molecular docking suggested the direct binding of formononetin to its target proteins including INSR, TNF, and CXCR4. Finally, we validated our findings by using formononetin-treated human prostate cancer cell DU145. For the first time, our result suggested the use of formononetin for treating prostate cancer through targeting different cell types in a single-cell level.
Insights
Formononetin shows promise for treating prostate cancer by targeting specific genes in immune and tissue cells at a single-cell level. This study identifies novel biomarkers and therapeutic strategies for prostate cancer prognosis and treatment.
Area of Science:
- Oncology
- Molecular Biology
- Pharmacology
Background:
- Prostate cancer is a heterogeneous disease affecting older males, necessitating novel therapeutic strategies.
- Targeting gene candidates at the single-cell level offers a promising approach for prostate cancer treatment.
- Understanding molecular alterations is crucial for developing effective interventions.
Purpose of the Study:
- To analyze single-cell sequencing data to identify differential gene expression in prostate cancer.
- To determine therapeutic targets of formononetin in prostate cancer immune and tissue cells using network pharmacology.
- To validate the therapeutic potential of formononetin in human prostate cancer cells.
Main Methods:
- Single-cell sequencing data analysis from previous reports.
- Network pharmacology for identifying therapeutic targets of formononetin.
- Molecular docking to assess formononetin's binding to target proteins.
- Validation using formononetin-treated human prostate cancer cell line DU145.
Main Results:
- Identified differential gene expression clusters, including immunoglobulin kappa C, as potential prostate cancer biomarkers.
- Network pharmacology revealed formononetin targets like CD74 and THBS1 involved in immune cell function.
- Formononetin targets insulin receptor (INSR) and zinc-alpha-2-glycoprotein, crucial for tissue cell metabolism.
- Molecular docking confirmed direct binding of formononetin to INSR, TNF, and CXCR4.
Conclusions:
- Formononetin demonstrates potential as a novel therapeutic agent for prostate cancer.
- Targeting specific cell types at a single-cell level with formononetin offers a new treatment strategy.
- Identified novel biomarkers and therapeutic targets for improved prostate cancer prognosis and management.
Related Concept Videos
Targeted Cancer Therapies
There are several types of targeted therapies against...
Drugs that Stabilize Microtubules

