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Protein WISDOM: A Workbench for In silico De novo Design of BioMolecules
Published on: July 25, 2013
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An algorithmic framework for synthetic cost-aware decision making in molecular design.
Jenna C Fromer1, Connor W Coley2,3
1Department of Chemical Engineering, MIT, Cambridge, MA, USA.
Nature Computational Science
|June 17, 2024
Summary
We developed SPARROW, a quantitative framework to prioritize molecule synthesis for drug discovery. It balances predicted information gain against the cost of synthesis, optimizing the selection of molecules for testing.
Area of Science:
- Medicinal Chemistry
- Computational Chemistry
- Drug Discovery
Background:
- Molecule discovery relies on iterative design, synthesis, and testing.
- Selecting molecules for synthesis is complex and often relies on expert intuition.
Purpose of the Study:
- To propose SPARROW, a quantitative decision-making framework for prioritizing molecules.
- To balance expected information gain with synthetic cost in molecule evaluation.
Main Methods:
- SPARROW integrates molecular design, property prediction, and retrosynthetic planning.
- It quantifies the utility of testing a molecule against batch synthesis costs.
Main Results:
- The algorithm captures non-additive costs associated with batch synthesis.
- It effectively leverages common reaction steps and intermediates.
- SPARROW demonstrates scalability to hundreds of molecules.
Conclusions:
- SPARROW provides a data-driven approach to optimize molecule selection in drug discovery.
- This framework enhances the efficiency of identifying molecules with desirable properties.
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