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Selecting Multiple Biomarker Subsets with Similarly Effective Binary Classification Performances
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Many-Objective Jaccard-Based Evolutionary Feature Selection for High-Dimensional Imbalanced Data Classification.

H Saadatmand, Mohammad-R Akbarzadeh-T

    IEEE Transactions on Pattern Analysis and Machine Intelligence
    |June 18, 2024
    PubMed
    Summary

    This study introduces Jaccard similarity-based evolutionary many-objective feature selection (JSEMO) to tackle high-dimensional, imbalanced data. JSEMO enhances diversity and improves classification accuracy, balance accuracy, and g-mean metrics.

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    Area of Science:

    • Computational intelligence
    • Machine learning
    • Data mining

    Background:

    • Feature selection (FS) methods, filters and wrappers, face challenges in high-dimensional, many-objective, imbalanced datasets.
    • Evolutionary wrapper-based FS shows promise but requires efficient handling of computational costs and performance metrics.

    Purpose of the Study:

    • To propose a novel Jaccard similarity (JS)-based evolutionary many-objective (JSEMO) feature selection approach.
    • To concurrently address evolutionary FS and imbalanced classifier selection.
    • To investigate the mutual influence between feature selection and classifier choice.

    Main Methods:

    • JSEMO integrates JS into population initialization, reproduction, and elitism for enhanced diversity and duplicate solution avoidance.
    • A set-based variation operator using intersection and union operators is employed for binary coding compatibility.
    • A double-weighted KNN (KNN2W) classifier with four objectives is introduced for imbalanced data handling.

    Main Results:

    • JSEMO generated distinct optimal features across 15 benchmark problems, outperforming 20 existing methods.
    • Significant improvements were observed in overall accuracy, balance accuracy, and g-mean metrics.
    • Comparable feature set size and computational cost were maintained.

    Conclusions:

    • JSEMO effectively addresses challenges in high-dimensional, many-objective, imbalanced feature selection.
    • The integration of JS and the set-based variation operator positively impacts algorithm performance.
    • KNN2W with appropriate metrics is crucial for handling imbalanced distributions in many-objective FS.