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Updated: Jun 23, 2026

Microbiota Analysis Using Two-step PCR and Next-generation 16S rRNA Gene Sequencing
Published on: October 15, 2019
What is the association between the microbiome and cognition? An umbrella review protocol
Joshua Z Goldenberg1,2, Traver J Wright3, Richard D Batson1,2
1Helfgott Research Institute, National University of Natural Medicine, Portland, Oregon, USA.
Introduction:
Cognitive impairment is reported in a variety of clinical conditions including Alzheimer's disease, Parkinson's and 'long-COVID'. Interestingly, many of these clinical conditions are also associated with microbial dysbiosis. This comanifestation of cognitive and microbiome findings in seemingly unrelated maladies suggests that they could share a common mechanism and potentially presents a treatment target. Although a rapidly growing body of literature has documented this comorbid presentation within specific conditions, an overview highlighting potential parallels across healthy and clinical populations is lacking. The objective of this umbrella review, therefore, is to summarise and synthesise the findings of these systematic reviews.
Methods And Analysis:
On 2 April 2023, we searched MEDLINE (Pubmed), Embase (Ovid), the Web of Science (Core Collection), the Cochrane Library of Systematic Reviews and Epistemonikos as well as grey literature sources, for systematic reviews on clinical conditions and interventions where cognitive and microbiome outcomes were coreported. An updated search will be conducted before completion of the project if the search-to-publication date is >1 year old. Screening, data abstraction and quality assessment (AMSTAR 2, A MeaSurement Tool to Assess systematic Reviews) will be conducted independently and in duplicate, with disagreements resolved by consensus. Evidence certainty statements for each review's conclusions (eg, Grading of Recommendations Assessment, Development and Evaluation (GRADE)) will be extracted or constructed de novo. A narrative synthesis will be conducted and delineated by the review question. Primary study overlap will be visualised using a citation matrix as well as calculated using the corrected covered area method.
Ethics And Dissemination:
No participant-identifying information will be used in this review. No ethics approval was required due to our study methodology. Our findings will be presented at national and international conferences and disseminated via social media and press releases. We will recruit at least one person living with cognitive impairment to collaborate on writing the plain language summary for the review.
Prospero Registration Number:
CRD42023412903.
Insights
Cognitive impairment and microbial dysbiosis often co-occur in various conditions, suggesting a shared mechanism. This umbrella review synthesizes existing research to explore these microbiome-cognition links.
Area of Science:
- Neuroscience
- Microbiome research
- Systematic review methodology
Background:
- Cognitive impairment is linked to conditions like Alzheimer's, Parkinson's, and long-COVID.
- Microbial dysbiosis is frequently observed in these same clinical conditions.
- The co-occurrence suggests a potential shared mechanism and therapeutic target.
Purpose of the Study:
- To conduct an umbrella review of systematic reviews.
- To summarize and synthesize findings on cognitive and microbiome outcomes.
- To explore potential parallels across healthy and clinical populations.
Main Methods:
- Comprehensive search of multiple databases (MEDLINE, Embase, Web of Science, Cochrane, Epistemonikos) and grey literature.
- Independent screening, data abstraction, and quality assessment (AMSTAR 2) by duplicate reviewers.
- Narrative synthesis of findings, with evidence certainty assessed using GRADE criteria.
Main Results:
- This section is to be filled upon completion of the review.
- Synthesis of existing systematic reviews on the topic.
- Identification of common themes and potential mechanisms linking cognition and the microbiome.
Conclusions:
- This section is to be filled upon completion of the review.
- Potential implications for understanding and treating cognitive impairment.
- Highlighting the need for further research into microbiome-based interventions.
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Introduction to the Human Microbiota
Development of Human Microbiota
Microbiome of the Eye
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