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C2-Symmetrical Terphenyl Derivatives as Small Molecule Inhibitors of Programmed Cell Death 1/Programmed Death Ligand
Joanna Klimek1,2, Oskar Kruc1,2, Joanna Ceklarz1
1Department of Organic Chemistry, Faculty of Chemistry, Jagiellonian University, Gronostajowa St. 2, 30-387 Cracow, Poland.
Abstract:
The PD-1/PD-L1 complex is an immune checkpoint responsible for regulating the natural immune response, but also allows tumors to escape immune surveillance. Inhibition of the PD-1/PD-L1 axis positively contributes to the efficacy of cancer treatment. The only available therapeutics targeting PD-1/PD-L1 are monoclonal antibody-based drugs, which have several limitations. Therefore, small molecule compounds are emerging as an attractive alternative that can potentially overcome the drawbacks of mAb-based therapy. In this article, we present a novel class of small molecule compounds based on the terphenyl scaffold that bind to PD-L1. The general architecture of the presented structures is characterized by axial symmetry and consists of three elements: an m-terphenyl core, an additional aromatic ring, and a solubilizing agent. Using molecular docking, we designed a series of final compounds, which were subsequently synthesized and tested in HTRF assay and NMR binding assay to evaluate their activity. In addition, we performed an in-depth analysis of the mutual arrangement of the phenyl rings of the terphenyl core within the binding pocket of PD-L1 and found several correlations between the plane angle values and the affinity of the compounds towards the protein.
Insights
Novel small molecule compounds targeting the PD-1/PD-L1 immune checkpoint offer a promising alternative to antibody drugs for cancer therapy. These terphenyl-based compounds show potential for overcoming current treatment limitations.
Area of Science:
- Immunology
- Medicinal Chemistry
- Structural Biology
Background:
- The programmed cell death protein 1 (PD-1)/programmed death-ligand 1 (PD-L1) pathway is a critical immune checkpoint that tumors exploit to evade immune surveillance.
- Current therapies targeting the PD-1/PD-L1 axis primarily utilize monoclonal antibodies, which present certain limitations in clinical application.
- Small molecule inhibitors represent a potential alternative to overcome the drawbacks associated with antibody-based therapies.
Purpose of the Study:
- To design, synthesize, and evaluate a novel class of small molecule compounds targeting the PD-L1 protein.
- To explore the potential of terphenyl scaffolds as a basis for developing new PD-L1 inhibitors.
- To investigate the structure-activity relationships of these compounds concerning their binding affinity to PD-L1.
Main Methods:
- Computational molecular docking was employed to design potential small molecule inhibitors.
- A series of terphenyl-based compounds were synthesized based on computational design.
- In vitro assays, including Homogeneous Time-Resolved Fluorescence (HTRF) and Nuclear Magnetic Resonance (NMR) binding assays, were used to assess compound activity and binding affinity.
- Detailed structural analysis of compound-protein interactions within the PD-L1 binding pocket was performed.
Main Results:
- A novel series of small molecule compounds based on a terphenyl scaffold were successfully designed and synthesized.
- The compounds demonstrated binding activity to PD-L1, as confirmed by HTRF and NMR assays.
- Analysis revealed correlations between the conformational arrangement of the terphenyl core's phenyl rings and the binding affinity to PD-L1.
Conclusions:
- Terphenyl-based small molecules represent a viable and promising class of inhibitors for the PD-L1 immune checkpoint.
- These compounds have the potential to overcome limitations associated with existing antibody-based therapies targeting the PD-1/PD-L1 axis.
- Further investigation into the structure-activity relationships can guide the development of more potent and effective cancer immunotherapies.
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