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Updated: Jun 23, 2025

A Virtual Machine Platform for Non-Computer Professionals for Using Deep Learning to Classify Biological Sequences of Metagenomic Data
Published on: September 25, 2021
A neural network model for online one-shot storage of pattern sequences
Jan Melchior1, Aya Altamimi1, Mehdi Bayati1
1Institute for Neural Computation, Faculty of Computer Science, Ruhr University Bochum, Bochum, Germany.
Abstract:
Based on the CRISP theory (Content Representation, Intrinsic Sequences, and Pattern completion), we present a computational model of the hippocampus that allows for online one-shot storage of pattern sequences without the need for a consolidation process. In our model, CA3 provides a pre-trained sequence that is hetero-associated with the input sequence, rather than storing a sequence in CA3. That is, plasticity on a short timescale only occurs in the incoming and outgoing connections of CA3, not in its recurrent connections. We use a single learning rule named Hebbian descent to train all plastic synapses in the network. A forgetting mechanism in the learning rule allows the network to continuously store new patterns while forgetting those stored earlier. We find that a single cue pattern can reliably trigger the retrieval of sequences, even when cues are noisy or missing information. Furthermore, pattern separation in subregion DG is necessary when sequences contain correlated patterns. Besides artificially generated input sequences, the model works with sequences of handwritten digits and natural images. Notably, our model is capable of improving itself without external input, in a process that can be referred to as 'replay' or 'offline-learning', which helps in improving the associations and consolidating the learned patterns.
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