Related Experiment Video
Updated: Jun 22, 2025

A Chromatin Immunoprecipitation Assay to Identify Novel NFAT2 Target Genes in Chronic Lymphocytic Leukemia
Published on: December 4, 2018
Calcineurin/NFATc1 pathway represses cellular cytotoxicity by modulating histone H3 expression
Yuki Sato1, Makoto Habara1, Shunsuke Hanaki1
1Department of Veterinary Biochemistry, Joint Faculty of Veterinary Medicine, Yamaguchi University, 1677-1 Yoshida, Yamaguchi, 753-8511, Japan.
Abstract:
Excess amounts of histones in the cell induce mitotic chromosome loss and genomic instability, and are therefore detrimental to cell survival. In yeast, excess histones are degraded by the proteasome mediated via the DNA damage response factor Rad53. Histone expression, therefore, is tightly regulated at the protein level. Our understanding of the transcriptional regulation of histone genes is far from complete. In this study, we found that calcineurin inhibitor treatment increased histone protein levels, and that the transcription factor NFATc1 (nuclear factor of activated T cells 1) repressed histone transcription and acts downstream of the calcineurin. We further revealed that NFATc1 binds to the promoter regions of many histone genes and that histone transcription is downregulated in a manner dependent on intracellular calcium levels. Indeed, overexpression of histone H3 markedly inhibited cell proliferation. Taken together, these findings suggest that NFATc1 prevents the detrimental effects of histone H3 accumulation by inhibiting expression of histone at the transcriptional level.
Insights
Excess histones cause genomic instability. The transcription factor NFATc1 (nuclear factor of activated T cells 1) represses histone gene expression, preventing harmful histone accumulation and maintaining cell survival.
Area of Science:
- Cell Biology
- Molecular Biology
- Genetics
Background:
- Excess histones lead to mitotic chromosome loss and genomic instability, threatening cell survival.
- Histone degradation in yeast involves the proteasome and Rad53, but transcriptional regulation remains unclear.
Purpose of the Study:
- To investigate the transcriptional regulation of histone genes.
- To identify factors controlling histone expression and their role in preventing genomic instability.
Main Methods:
- Treatment with calcineurin inhibitors.
- Analysis of transcription factor NFATc1 binding to histone gene promoters.
- Assessment of histone gene expression in response to intracellular calcium levels.
- Cell proliferation assays upon histone H3 overexpression.
Main Results:
- Calcineurin inhibitor treatment elevated histone protein levels.
- NFATc1 was identified as a repressor of histone transcription, acting downstream of calcineurin.
- NFATc1 binds to promoters of multiple histone genes.
- Histone transcription is downregulated by intracellular calcium levels.
- Overexpression of histone H3 significantly impaired cell proliferation.
Conclusions:
- NFATc1 plays a crucial role in preventing detrimental histone accumulation.
- NFATc1 maintains genomic stability by repressing histone gene expression transcriptionally.
- Intracellular calcium levels modulate histone transcription via NFATc1.
Related Concept Videos
NF-κB-dependent Signaling Pathway
NF-κB-dependent Signaling Mechanism
The...
The Extrinsic Apoptotic Pathway
Co-activators and Co-repressors
Canonical Wnt Signaling Pathway
The Intrinsic Apoptotic Pathway
TGF - β Signaling Pathway

