Related Experiment Video
Updated: May 7, 2026

RNA Fluorescence in situ Hybridization FISH to Visualize Microbial Colonization and Infection in Caenorhabditis elegans Intestines
Published on: July 27, 2022
Rodent Gut Bacteria Coexisting with an Insect Gut Virus in Tapeworm Parasitic Cysts: Metagenomic Evidence of
Amro Ammar1,2, Vaidhvi Singh1,2, Sanja Ilic3
1Division of Gastroenterology and Liver Disease, Case Western Reserve University School of Medicine, Cleveland, OH 44106, USA.
Abstract:
In medicine, parasitic cysts (e.g., brain cysticerci) are believed to be sterile, and are primarily treated with antiparasitic medications, not antibiotics, which could prevent abscess formation and localized inflammation. This study quantified the microbial composition of parasitic cysts in a wild rodent, using multi-kingdom metagenomics to comprehensively assess if parasitic cysts are sterile, and further understand gut microbial translocation and adaptation in wildlife confined environments, outside the gut. Analysis was conducted on DNA from two hepatic parasitic cysts from a feline tapeworm, Hydatigera (Taenia) taeniaeformis, affecting a wild vole mouse (Microtus pennsylvanicus), and from feces, liver and peritoneal fluid of this and two other concurrent individual wild voles trapped during pest control in one of our university research vegetable gardens. Bacterial metagenomics revealed the presence of gut commensal/opportunistic species, Parabacteroides distasonis, Bacteroides (Bacteroidota); Klebsiella variicola, E. coli (Enterobacteriaceae); Enterococcus faecium and Lactobacillus acidophilus (Bacillota) inhabiting the cysts, and peritoneal fluid. Remarkably, viral metagenomics revealed various murine viral species, and unexpectedly, a virus from the insect armyworm moth (Pseudaletia/Mythimna unipuncta), known as Mythimna unipuncta granulovirus A (MyunGV-A), in both cysts, and in one fecal and one peritoneal sample from the other non-cyst voles, indicating the survival and adaption potential of the insect virus in voles. Metagenomics also revealed a significantly lower probability of fungal detection in cysts compared to that in peritoneal fluid/feces (p < 0.05), with single taxon detection in each cyst (Malassezia and Pseudophaeomoniella oleicola). The peritoneal fluid had the highest probability for fungi. In conclusion, metagenomics revealed that bacteria/viruses/fungi coexist within parasitic cysts supporting the potential therapeutic benefits of antibiotics in cystic diseases, and in inflammatory microniches of chronic diseases, such as Crohn's disease gut wall cavitating micropathologies, from which we recently isolated similar synergistic pathogenic Bacteroidota and Enterobacteriaceae, and Bacillota.
Insights
Parasitic cysts are not sterile, harboring bacteria, viruses, and fungi. This finding suggests antibiotics may benefit cystic diseases and chronic inflammatory conditions.
Area of Science:
- Microbiology
- Parasitology
- Wildlife Ecology
Background:
- Parasitic cysts, like brain cysticerci, are traditionally considered sterile and treated with antiparasitic drugs.
- Antibiotics are not typically used, despite their potential to prevent abscesses and inflammation.
Purpose of the Study:
- To investigate the microbial composition of parasitic cysts in wild rodents.
- To determine if parasitic cysts are sterile.
- To understand microbial translocation and adaptation in wildlife.
Main Methods:
- Multi-kingdom metagenomics was employed to analyze DNA from parasitic cysts and host samples (feces, liver, peritoneal fluid).
- Samples were obtained from voles infected with the tapeworm Hydatigera (Taenia) taeniaeformis.
Main Results:
- Bacteria, including gut commensals like Parabacteroides distasonis and E. coli, were found in cysts and peritoneal fluid.
- Viral metagenomics detected murine viruses and an insect virus (Mythimna unipuncta granulovirus A) in cysts and other samples.
- Fungal detection was significantly lower in cysts compared to peritoneal fluid/feces, with Malassezia and Pseudophaeomoniella oleicola identified in cysts.
Conclusions:
- Metagenomics confirms that parasitic cysts harbor a complex microbiome of bacteria, viruses, and fungi.
- These findings support the potential therapeutic use of antibiotics in treating cystic diseases.
- The results may also inform treatments for chronic inflammatory conditions with similar microbial profiles.
More Related Videos
Related Concept Videos
Diversity of Protists I
Microbial Interactions: Parasitism
Microbiota of the Large Intestine
Human Virome

