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Next Generation Sequencing for the Detection of Actionable Mutations in Solid and Liquid Tumors
Published on: September 20, 2016
Clinical Utility of Tumor Next-Generation Sequencing Panel Testing to Inform Treatment Decisions for Patients With
Lucia Bogdan1, Ramy R Saleh2, Lisa Avery3
1Division of Medical Oncology, Department of Medicine, University of Toronto, Toronto, Canada.
Purpose:
There is limited information about the clinical utility of targeted next-generation sequencing (NGS) panel testing to inform decision making for patients with advanced solid tumors. The Ontario-wide Cancer Targeted Nucleic Acid Evaluation (OCTANE) is a prospective study that enrolled more than 4,500 patients with solid tumor for NGS panel testing. We performed a retrospective survey of medical oncologists to evaluate the impact of NGS testing on treatment decisions.
Methods:
Patients and treating oncologists were identified at the Princess Margaret Cancer Center between 2016 and 2021. Tumor-only sequencing was performed using a gene panel of either 555 or 161 cancer genes. Oncologists were asked to review testing results and complete a survey indicating whether NGS testing affected treatment decisions. The primary outcome of this study was rate of treatment change on the basis of mutation results. Patient, test, and physician factors were evaluated for association with treatment changes using univariate analyses and a mixed-effects model.
Results:
Of the 582 surveys sent, 394 (67.7%) were completed. We found that 188 (47.7%) patients had testing results classified as actionable by the oncologist and 62 (15.7%) patients were matched to treatment, of whom 37 (60%) were enrolled in a clinical trial, 13 (21%) received an approved drug, four (6%) were prescribed off-label therapy, and eight (13%) avoided ineffective treatment. Patient, test, and physician characteristics were not significantly associated with treatment change. There was no difference in overall survival between patients who received matched treatment versus those who did not (P = .55, median survival not reached).
Conclusion:
OCTANE testing led to a change in drug treatment in 15.7% of patients, supporting the clinical utility of NGS panel testing for patients with advanced solid tumors.
Insights
Next-generation sequencing (NGS) panel testing changed drug treatment for 15.7% of advanced solid tumor patients. This supports the clinical utility of targeted NGS in guiding treatment decisions for cancer care.
Area of Science:
- Oncology
- Genomics
- Clinical Trials
Background:
- Limited data exists on the clinical utility of targeted next-generation sequencing (NGS) panel testing for advanced solid tumors.
- The Ontario-wide Cancer Targeted Nucleic Acid Evaluation (OCTANE) study prospectively enrolled over 4,500 patients for NGS panel testing.
Purpose of the Study:
- To retrospectively evaluate the impact of NGS panel testing on treatment decisions made by medical oncologists.
- To assess the clinical utility of NGS testing in informing treatment strategies for patients with advanced solid tumors.
Main Methods:
- A retrospective survey of medical oncologists was conducted for patients who underwent NGS panel testing (555 or 161 genes) between 2016-2021.
- Oncologists reported whether NGS results influenced treatment decisions, with treatment change as the primary outcome.
- Univariate and mixed-effects models analyzed factors associated with treatment changes.
Main Results:
- Of 394 completed surveys, 47.7% of patients had actionable NGS results.
- Treatment was changed for 15.7% of patients based on NGS findings, including clinical trial enrollment, approved drugs, off-label therapy, or avoiding ineffective treatments.
- No significant association was found between patient, test, or physician factors and treatment changes. Overall survival did not differ between matched and unmatched treatment groups.
Conclusions:
- NGS panel testing led to a drug treatment change in 15.7% of patients with advanced solid tumors.
- These findings support the clinical utility of NGS panel testing in guiding treatment decisions for this patient population.
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