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Updated: Jun 22, 2025

An R-Based Landscape Validation of a Competing Risk Model
Published on: September 16, 2022
External validation of a 2-year all-cause mortality prediction tool developed using machine learning in patients with
Dung N T Tran1,2, Michel Ducher1,3, Denis Fouque4,5
1Laboratoire de Biométrie et Biologie Évolutive, UMR 5558, CNRS Lyon, Université Claude Bernard Lyon 1, 43 Boulevard du 11 Novembre 1918, 69100, Lyon, Villeurbanne, France.
Background:
Chronic kidney disease (CKD) is associated with increased mortality. Individual mortality prediction could be of interest to improve individual clinical outcomes. Using an independent regional dataset, the aim of the present study was to externally validate the recently published 2-year all-cause mortality prediction tool developed using machine learning.
Methods:
A validation dataset of stage 4 or 5 CKD outpatients was used. External validation performance of the prediction tool at the optimal cutoff-point was assessed by the area under the receiver operating characteristic curve (AUC-ROC), accuracy, sensitivity, and specificity. A survival analysis was then performed using the Kaplan-Meier method.
Results:
Data of 527 outpatients with stage 4 or 5 CKD were analyzed. During the 2 years of follow-up, 91 patients died and 436 survived. Compared to the learning dataset, patients in the validation dataset were significantly younger, and the ratio of deceased patients in the validation dataset was significantly lower. The performance of the prediction tool at the optimal cutoff-point was: AUC-ROC = 0.72, accuracy = 63.6%, sensitivity = 72.5%, and specificity = 61.7%. The survival curves of the predicted survived and the predicted deceased groups were significantly different (p < 0.001).
Conclusion:
The 2-year all-cause mortality prediction tool for patients with stage 4 or 5 CKD showed satisfactory discriminatory capacity with emphasis on sensitivity. The proposed prediction tool appears to be of clinical interest for further development.
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