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Merlin: A Vision Language Foundation Model for 3D Computed Tomography.

Louis Blankemeier1,2,3, Joseph Paul Cohen2, Ashwin Kumar2,3

  • 1Department of Electrical Engineering, Stanford University.

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Merlin, a novel 3D vision-language model (VLM), interprets abdominal CT scans using EHR data and reports. This AI tool enhances medical image analysis and disease prediction, trained efficiently on a single GPU.

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Area of Science:

  • Artificial Intelligence in Medical Imaging
  • Radiology and Medical Informatics
  • Computer Vision and Natural Language Processing

Background:

  • Millions of abdominal CT scans require radiologist interpretation annually in the US.
  • Current AI models for medical imaging often limited to 2D data and short reports.
  • Need for advanced AI to assist radiologists and extract novel insights from complex scans.

Purpose of the Study:

  • Introduce Merlin, a 3D vision-language model (VLM) for abdominal CT interpretation.
  • Leverage electronic health records (EHR) and radiology reports for pretraining without manual annotation.
  • Enhance automated medical image analysis and extract physiological insights from CT scans.

Main Methods:

  • Trained Merlin on a large clinical dataset: 6+ million CT images, 1.8+ million EHR diagnosis codes, and 6+ million radiology report tokens.
  • Evaluated Merlin on 6 task types including zero-shot classification, cross-modal retrieval, chronic disease prediction, report generation, and 3D segmentation.
  • Performed internal and external validation on diverse CT datasets, including public benchmarks.

Main Results:

  • Merlin demonstrated favorable performance compared to existing task-specific baselines across multiple evaluation tasks.
  • The model achieved strong results in zero-shot findings and phenotype classification, and cross-modal retrieval.
  • Efficient training achieved on a single GPU, indicating potential for democratized AI model development.

Conclusions:

  • Merlin represents a significant advancement in 3D VLMs for abdominal CT interpretation.
  • The model's ability to integrate EHR data and unstructured reports offers a powerful tool for clinical decision support.
  • The computationally efficient training approach facilitates broader adoption of advanced AI in healthcare settings.