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Evolutionary conservation of VSX2 super-enhancer modules in retinal development.

Victoria Honnell1, Shannon Sweeney1, Jackie Norrie1

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Development (Cambridge, England)
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Summary

Super-enhancers (SEs) control cell identity. Human VSX2 SE modules show specific activity, rescuing microphthalmia in mice and revealing roles in retinal organoid development and bipolar neuron formation.

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Area of Science:

  • Genomics
  • Developmental Biology
  • Ophthalmology

Background:

  • Super-enhancers (SEs) are crucial genomic regions regulating cell identity and fate.
  • Developmental stage- and cell type-specific modules within the murine Vsx2 SE were previously identified.

Purpose of the Study:

  • To investigate the function and conserved activity of human VSX2 SE modules in retinal development.
  • To model human retinal development and disease using stem cell-derived organoids.

Main Methods:

  • Reporter gene assays to assess human VSX2 SE module activity.
  • Gene editing (CRISPR-Cas9) to delete SE modules in human embryonic stem cells.
  • Generation of human retinal organoids for functional analysis.

Main Results:

  • Human VSX2 SE modules exhibit conserved developmental stage- and cell type-specific activity.
  • Insertion of a human VSX2 SE module rescued the microphthalmia phenotype in mice.
  • Deletion of specific modules in human retinal organoids led to reduced organoid size and impaired bipolar neuron development.

Conclusions:

  • The human VSX2 SE is a prototypical model for studying complex gene regulation in neurogenesis.
  • Dysregulation of VSX2 SE modules may contribute to human eye developmental disorders and phenotypic diversity.