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Related Concept Videos

Master Transcription Regulators02:23

Master Transcription Regulators

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Master transcription regulators are regulatory proteins that are predominantly responsible for regulating the expression of multiple genes. Often these genes work in concert to drive a  complex process. Activation of a master transcription regulator can lead to a cascade of transcriptional activation necessary for that outcome. These regulators can directly bind to the regulatory sequences of the various genes involved, or they can indirectly regulate transcription by binding to regulatory...
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Transcription Elongation Factors02:35

Transcription Elongation Factors

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Transcription elongation is a dynamic process that alters depending upon the sequence heterogeneity of the DNA being transcribed. Hence, it is not surprising that the elongation complex's composition also varies along the way while transcribing a gene.
The transcription elongation is regulated via pausing of RNA polymerase on several occasions during transcription. In bacteria, these halts are necessary because the transcription of DNA into mRNA is coupled to the translation of that mRNA...
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RNA Polymerase II Accessory Proteins02:36

RNA Polymerase II Accessory Proteins

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Proteins that regulate transcription can do so either via direct contact with RNA Polymerase or through indirect interactions facilitated by adaptors, mediators, histone-modifying proteins, and nucleosome remodelers. Direct interactions to activate transcription is seen in bacteria as well as in some eukaryotic genes. In these cases, upstream activation sequences are adjacent to the promoters, and the activator proteins interact directly with the transcriptional machinery. For example, in...
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Co-activators and Co-repressors02:04

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Gene transcription is regulated by the synergistic action of several proteins that form a complex at a gene regulatory site. This is observed in eukaryotes, where the regulation of gene expression is a complex process. Regulatory proteins in eukaryotes can broadly be classified into two types – regulators that bind directly to specific DNA sequences and co-regulators that associate with regulatory proteins but cannot directly bind to the DNA. These co-regulators are further divided into...
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Chromatin Structure Regulates pre-mRNA Processing02:41

Chromatin Structure Regulates pre-mRNA Processing

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In eukaryotic cells, nascent mRNA transcripts need to undergo many post-transcriptional modifications to reach the cell cytoplasm and translate into functional proteins. For a long time, transcription and pre-mRNA processing were considered two independent events that occur sequentially in the cell. However, it has now been well established that transcription and pre-mRNA processing are two simultaneous processes that are precisely regulated inside the cell.
The chromatin structure, especially...
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Cis-regulatory Sequences02:02

Cis-regulatory Sequences

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Cis-regulatory sequences are short fragments of non-coding DNA that are present on the same chromosomes as the genes that they regulate. These fragments serve as binding sites for transcriptional regulators, proteins that are responsible for controlling gene transcription and differential gene expression across cell types in eukaryotes. Cis-regulatory sequences can be close to the gene of interest or thousands of bases away in the DNA sequence; however, those sequences that are further away are...
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Related Experiment Video

Updated: Jun 21, 2025

Repressing Gene Transcription by Redirecting Cellular Machinery with Chemical Epigenetic Modifiers
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Repressing Gene Transcription by Redirecting Cellular Machinery with Chemical Epigenetic Modifiers

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MeCP2 Interacts with the Super Elongation Complex to Regulate Transcription.

Jun Young Sonn, Wonho Kim, Marta Iwanaszko

    Biorxiv : the Preprint Server for Biology
    |July 15, 2024
    PubMed
    Summary

    Methyl-CpG binding protein 2 (MeCP2) loss-of-function mutations cause Rett syndrome. This study reveals MeCP2 interacts with the Super Elongation Complex (SEC) to regulate gene transcription, uncovering a new regulatory mechanism.

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    Artificial RNA Polymerase II Elongation Complexes for Dissecting Co-transcriptional RNA Processing Events
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    Artificial RNA Polymerase II Elongation Complexes for Dissecting Co-transcriptional RNA Processing Events

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    Area of Science:

    • Neuroscience
    • Molecular Biology
    • Genetics

    Background:

    • Loss-of-function mutations in methyl-CpG binding protein 2 (MeCP2) cause Rett syndrome, a severe neurodevelopmental disorder.
    • MeCP2 has been primarily considered a transcriptional repressor, but conflicting data suggest broader regulatory roles.
    • The precise molecular mechanisms of MeCP2-mediated gene regulation remain largely elusive.

    Purpose of the Study:

    • To investigate the molecular mechanisms underlying MeCP2-dependent gene regulation.
    • To identify novel MeCP2 interactors and functional partners in gene expression.
    • To explore the role of MeCP2 in transcriptional elongation.

    Main Methods:

    • Utilized a human MECP2 gain-of-function Drosophila model to screen for genetic modifiers.
    • Performed co-immunoprecipitation and biochemical assays to assess physical interactions between MeCP2 and the Super Elongation Complex (SEC) in human cells and mouse brain.
    • Analyzed MeCP2 and AFF4 binding to target genes in mouse cortex using chromatin immunoprecipitation (ChIP) assays.

    Main Results:

    • Identified subunits of the Drosophila Super Elongation Complex (SEC) as genetic interactors of MECP2.
    • Demonstrated physical interaction between MeCP2 and the SEC scaffold protein AFF4 in human cells and mouse brain.
    • Showed that loss of MeCP2 in mouse cortex reduces AFF4 binding on synaptic function genes, correlating with decreased RNA polymerase II occupancy.

    Conclusions:

    • Reveals a novel mechanism where MeCP2 interacts with the SEC to regulate transcriptional elongation.
    • Establishes a direct link between MeCP2, AFF4, and RNA polymerase II activity.
    • Provides new insights into the multifaceted role of MeCP2 in gene expression and its implications for neurodevelopmental disorders.