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Updated: Jun 21, 2025

An Ultrahigh-throughput Microfluidic Platform for Single-cell Genome Sequencing
Published on: May 23, 2018
loco-pipe: an automated pipeline for population genomics with low-coverage whole-genome sequencing
Zehua T Zhou1, Gregory L Owens2, Wesley A Larson3
1Department of Integrative Biology, University of California Berkeley, Berkeley, CA 94720, USA.
Summary:
We developed loco-pipe, a Snakemake pipeline that seamlessly streamlines a set of essential population genomic analyses for low-coverage whole genome sequencing (lcWGS) data. loco-pipe is highly automated, easily customizable, massively parallelized, and thus is a valuable tool for both new and experienced users of lcWGS.
Availability And Implementation:
loco-pipe is published under the GPLv3. It is freely available on GitHub (github.com/sudmantlab/loco-pipe) and archived on Zenodo (doi.org/10.5281/zenodo.10425920).
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