Related Experiment Video
Updated: Jun 21, 2025

Computation of Atmospheric Concentrations of Molecular Clusters from ab initio Thermochemistry
Published on: April 8, 2020
Enabling Ab Initio Molecular Dynamics under Bias: The CP2K+SMEAGOL Interface for Integrating Density Functional
Christian S Ahart1, Sergey K Chulkov2, Clotilde S Cucinotta1
1Imperial College London, Department of Chemistry and Thomas Young Centre, Molecular Sciences Research Hub, London W12 0BZ, U.K.
We developed a new interface for quantum transport simulations, enabling molecular dynamics for large systems under realistic conditions. This approach combines Density Functional Theory (DFT) with Non-Equilibrium Green
Area of Science:
- Computational Physics
- Materials Science
- Quantum Chemistry
Background:
- Density Functional Theory (DFT) and Non-Equilibrium Green's Functions (NEGF) are crucial for modeling quantum transport.
- Accurate simulations of quantum transport under bias are computationally demanding.
- Existing tools lack comprehensive features for large-scale condensed phase systems.
Purpose of the Study:
- To introduce a novel interface between CP2K and SMEAGOL for enhanced DFT-NEGF calculations.
- To implement and validate current-induced forces within the CP2K+SMEAGOL framework.
- To demonstrate the capability of DFT-NEGF for molecular dynamics simulations of condensed phase systems under bias.
Main Methods:
- Developed a new interface connecting the CP2K electronic structure package with the SMEAGOL NEGF code.
- Implemented current-induced forces for simulating bias-driven dynamics.
- Validated the interface using a 1D Au wire, parallel-plate capacitor, and a Au-H2-Au junction.
Main Results:
- Achieved good agreement between CP2K+SMEAGOL and SIESTA-based NEGF calculations.
- Successfully demonstrated molecular dynamics simulations of a solvated Au wire under bias.
- The new interface is the most feature-rich DFT-NEGF implementation for CP2K to date.
Conclusions:
- The CP2K+SMEAGOL interface provides a powerful and efficient tool for quantum transport studies.
- This work enables, for the first time, DFT-NEGF molecular dynamics for large condensed phase systems under realistic operating conditions.
- The developed interface significantly advances the simulation of nanoscale electronic devices and materials.
More Related Videos
10:52Multiscale Sampling of a Heterogeneous Water/Metal Catalyst Interface using Density Functional Theory and Force-Field Molecular Dynamics
Published on: April 12, 2019
05:51Isotopic Effect in Double Proton Transfer Process of Porphycene Investigated by Enhanced QM/MM Method
Published on: July 19, 2019
Related Concept Videos
Molecular Geometry and Dipole Moments
Coupled Reactions
Energy in adenosine triphosphate or ATP molecules is easily accessible to do work. ATP powers the majority of energy-requiring cellular reactions....
Interfacial Electrochemical Methods: Overview
Chemical Shift: Internal References and Solvent Effects
The internal reference compound generally used in NMR spectroscopy is tetramethylsilane (TMS). TMS is preferred because it is chemically inert, soluble in NMR solvents, and easily removable. Also, the highly shielded methyl protons in TMS yield an intense...
π Electron Effects on Chemical Shift: Overview
Thermal Sigmatropic Reactions: Overview
Sigmatropic shifts are classified based on an order term [i, j ], where i and j indicate the number of atoms across which each end of the σ bond migrates. Below are examples of a [3,3] sigmatropic shift in...