Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Concept Videos

Crystal Field Theory - Octahedral Complexes02:58

Crystal Field Theory - Octahedral Complexes

26.3K
Crystal Field Theory
To explain the observed behavior of transition metal complexes (such as colors), a model involving electrostatic interactions between the electrons from the ligands and the electrons in the unhybridized d orbitals of the central metal atom has been developed. This electrostatic model is crystal field theory (CFT). It helps to understand, interpret, and predict the colors, magnetic behavior, and some structures of coordination compounds of transition metals.
CFT focuses on...
26.3K

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

Porous Metals Formed by Leaching Mn-Ni Alloys.

ACS omega·2026
Same author

A General-Purpose Model Adsorption Isotherm and Whole Isotherm Surface Area Measurement Method.

ACS omega·2026
Same author

Correction: An automated protocol to construct flexibility parameters for classical forcefields: applications to metal-organic frameworks.

RSC advances·2025
Same author

How well do various QM-derived net atomic charges reproduce the electrostatic potential surrounding a material across multiple geometric conformations?

RSC advances·2025
Same author

Dihedral-torsion model potentials that include angle-damping factors.

RSC advances·2025
Same author

Correction to "Eleven NanoHUB Simulation Tools Using RASPA Software To Demonstrate Classical Atomistic Simulations of Fluids and Nanoporous Materials".

ACS omega·2025

Related Experiment Video

Updated: Jun 20, 2025

Synthesis and Characterization of Functionalized Metal-organic Frameworks
11:27

Synthesis and Characterization of Functionalized Metal-organic Frameworks

Published on: September 5, 2014

48.1K

An automated protocol to construct flexibility parameters for classical forcefields: applications to metal-organic

Reza Ghanavati1, Alma C Escobosa1, Thomas A Manz1

  • 1Chemical & Materials Engineering, New Mexico State University Las Cruces NM 88001 USA tmanz@nmsu.edu.

RSC Advances
|July 22, 2024
PubMed
Summary

This study developed and validated forcefield flexibility parameters for over 100 metal-organic frameworks (MOFs) using LASSO regression and quantum mechanical calculations. The resulting model accurately predicts material forces, enabling molecular dynamics simulations for properties like heat capacity.

More Related Videos

Multiscale Sampling of a Heterogeneous Water/Metal Catalyst Interface using Density Functional Theory and Force-Field Molecular Dynamics
10:52

Multiscale Sampling of a Heterogeneous Water/Metal Catalyst Interface using Density Functional Theory and Force-Field Molecular Dynamics

Published on: April 12, 2019

12.8K
Author Spotlight: Accelerating Discovery in Microporous Material Chemistry
07:20

Author Spotlight: Accelerating Discovery in Microporous Material Chemistry

Published on: October 6, 2023

3.5K

Related Experiment Videos

Last Updated: Jun 20, 2025

Synthesis and Characterization of Functionalized Metal-organic Frameworks
11:27

Synthesis and Characterization of Functionalized Metal-organic Frameworks

Published on: September 5, 2014

48.1K
Multiscale Sampling of a Heterogeneous Water/Metal Catalyst Interface using Density Functional Theory and Force-Field Molecular Dynamics
10:52

Multiscale Sampling of a Heterogeneous Water/Metal Catalyst Interface using Density Functional Theory and Force-Field Molecular Dynamics

Published on: April 12, 2019

12.8K
Author Spotlight: Accelerating Discovery in Microporous Material Chemistry
07:20

Author Spotlight: Accelerating Discovery in Microporous Material Chemistry

Published on: October 6, 2023

3.5K

Area of Science:

  • Materials Science
  • Computational Chemistry
  • Condensed Matter Physics

Background:

  • Force fields are crucial for simulating material properties.
  • Accurate parameterization of flexibility is essential for metal-organic frameworks (MOFs).
  • Existing methods often struggle with the complexity and redundancy of MOF flexibility interactions.

Purpose of the Study:

  • To construct and validate robust forcefield flexibility parameters for a large dataset of MOFs.
  • To develop a systematic protocol for identifying and quantifying important flexibility interactions in MOFs.
  • To enable accurate molecular dynamics simulations of MOF properties.

Main Methods:

  • Atom typing to identify bond, angle, and dihedral types.
  • Pruning dihedral types to reduce redundancy while preserving symmetry.
  • Classification of dihedral types (non-rotatable, hindered, rotatable, linear).
  • Smart selection of important torsion modes.
  • LASSO regression for computing force constants from quantum mechanically computed data (DFT, AIMD, torsion scans).
  • Validation using independent datasets and calculating R-squared and RMSE.

Main Results:

  • Developed and validated forcefield flexibility parameters for over 100 MOFs.
  • Achieved high accuracy with average R-squared values of 0.910 ± 0.018 for atom-in-material forces on validation datasets, even without bond-bond cross terms.
  • The SAVESTEPS protocol effectively parameterizes flexible forcefields.
  • Successfully computed heat capacities and thermal expansion coefficients for two MOFs using the developed parameters.

Conclusions:

  • The developed forcefield flexibility parameters and the SAVESTEPS protocol offer a reliable method for MOF simulations.
  • The approach significantly advances the accurate computational modeling of MOF properties.
  • This work paves the way for broader applications in materials design and discovery.