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Updated: Jun 19, 2025

A Web Tool for Generating High Quality Machine-readable Biological Pathways
Published on: February 8, 2017
The BioRECIPE Knowledge Representation Format
Emilee Holtzapple, Gaoxiang Zhou, Haomiao Luo
1Department of Biological Sciences, Carnegie Mellon University, Pittsburgh, Pennsylvania 15213, United States.
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The BioRECIPE (Biological system Representation for Evaluation, Curation, Interoperability, Preserving, and Execution) knowledge representation format was introduced to standardize and facilitate human-machine interaction while creating, verifying, evaluating, curating, and expanding executable models of intra- and intercellular signaling. This format allows a human user to easily preview and modify any model component, while it is at the same time readable by machines and can be processed by a suite of model development and analysis tools. The BioRECIPE format is compatible with multiple representation formats, natural language processing tools, modeling tools, and databases that are used by the systems and synthetic biology communities.
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