M6A-methylated circPOLR2B forms an R-loop and regulates the biological behavior of glioma stem cells through positive
Hongda Lin1,2,3, Zheng Cui1,2,3, Tiange E1,2,3
1Department of Neurosurgery, Shengjing Hospital of China Medical University, Shenyang, China.
Abstract:
Glioma is the most common primary brain tumor, and targeting glioma stem cells (GSCs) has become a key aspect of glioma treatment. In this study, we discovered a molecular network in which circRNA forms an R-loop structure with its parental gene to regulate the biological behavior of GSCs. Genes with abnormal expression in GSCs were screened using RNA-seq and circRNA microarray analyses. The study results showed that high expression of YTHDC1 in GSCs promoted the transportation of N6-methyladenosine (m6A)-modified circPOLR2B from the nucleus to the cytoplasm. Decreased circPOLR2B levels in the nucleus resulted in fewer R-loop structures formed with its parental gene POLR2B. This reduction in R-loop structures relieved the inhibitory effect on POLR2B transcription and upregulated PBX1 expression through alternative polyadenylation (APA) action, thereby promoting the malignant biological behavior of GSCs. Knockdown of YTHDC1, POLR2B, and PBX1 reduced xenograft tumor volume and prolonged the survival of nude mice. The YTHDC1/circPOLR2B/POLR2B/PBX1 axis plays a regulatory role in the biological behavior of GSCs, offering potential targets and novel strategies for the treatment of glioma.
Insights
This study reveals a novel molecular network involving circRNA and R-loop structures that regulate glioma stem cells. Targeting the YTHDC1/circPOLR2B/POLR2B/PBX1 axis offers new therapeutic strategies for glioma.
Area of Science:
- Molecular Biology
- Oncology
- Genetics
Background:
- Glioma, a common brain tumor, necessitates targeting glioma stem cells (GSCs) for effective treatment.
- Understanding the molecular mechanisms governing GSC behavior is crucial for developing novel therapeutic strategies.
Purpose of the Study:
- To elucidate a novel molecular network involving circular RNA (circRNA) and R-loop structures in regulating GSC malignant behaviors.
- To identify potential therapeutic targets within this network for glioma treatment.
Main Methods:
- RNA sequencing (RNA-seq) and circRNA microarray analyses were employed to screen for aberrantly expressed genes in GSCs.
- Functional studies involved knockdown experiments of key molecular players (YTHDC1, circPOLR2B, POLR2B, PBX1) in vitro and in vivo xenograft models.
Main Results:
- High YTHDC1 expression promotes the nuclear export of m6A-modified circPOLR2B, reducing nuclear R-loop formation with POLR2B.
- Reduced R-loops relieve POLR2B transcriptional inhibition, leading to PBX1 upregulation via alternative polyadenylation (APA), thus promoting GSC malignancy.
- Knockdown of YTHDC1, circPOLR2B, POLR2B, or PBX1 significantly reduced tumor volume and improved survival in mice.
Conclusions:
- The YTHDC1/circPOLR2B/POLR2B/PBX1 axis is identified as a key regulatory pathway in GSC biological behavior.
- This axis represents a promising therapeutic target and offers novel treatment strategies for glioma.
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