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Updated: Jul 22, 2026

Quantitative Mass Spectrometric Profiling of Cancer-cell Proteomes Derived From Liquid and Solid Tumors
Published on: February 27, 2015
Identification of chemoresistance targets in doxorubicin-resistant lung adenocarcinoma cells using LC-MS/MS-based
Nuzhat Bano1,2, K M Kainat1,2, Mohammad Imran Ansari1,2
1Food Toxicology Group, Food, Drug & Chemical, Environment, and Systems Toxicology (FEST) Division, CSIR-Indian Institute of Toxicology Research, Lucknow, Uttar Pradesh, India.
Abstract:
Acquired chemoresistance remains a significant challenge in the clinics as most of the treated cancers eventually emerge as hard-to-treat phenotypes. Therefore, identifying chemoresistance targets is highly warranted to manage the disease better. In this study, we employed a label-free LC-MS/MS-based quantitative proteomics analysis to identify potential targets and signaling pathways underlying acquired chemoresistance in a sub-cell line (A549DR) derived from the parental lung adenocarcinoma cells (A549) treated with gradually increasing doses of doxorubicin (DOX). Our proteomics analysis identified 146 upregulated and 129 downregulated targets in A549DR cells. The KEGG pathway and Gene ontology (GO) analysis of differentially expressed upregulated and downregulated proteins showed that most abundant upregulated pathways were related to metabolic pathways, cellular senescence, cell cycle, and p53 signaling. Meanwhile, the downregulated pathways were related to spliceosome, nucleotide metabolism, DNA replication, nucleotide excision repair, and nuclear-cytoplasmic transport. Further, STRING analysis of upregulated biological processes showed a protein-protein interaction (PPI) between CDK1, AKT2, SRC, STAT1, HDAC1, FDXR, FDX1, NPC1, ALDH2, GPx1, CDK4, and B2M, proteins. The identified proteins in this study might be the potential therapeutic targets for mitigating DOX resistance.
Insights
Identifying chemoresistance targets is crucial for treating cancers that become resistant to chemotherapy. This study used proteomics to find proteins and pathways involved in doxorubicin resistance in lung cancer cells, revealing potential therapeutic targets.
Area of Science:
- Proteomics
- Cancer Biology
- Molecular Oncology
Background:
- Acquired chemoresistance is a major clinical hurdle, leading to treatment failure in many cancers.
- Identifying novel therapeutic targets is essential for overcoming drug resistance and improving patient outcomes.
Purpose of the Study:
- To identify potential therapeutic targets and signaling pathways associated with acquired chemoresistance.
- To investigate the molecular mechanisms underlying doxorubicin (DOX) resistance in lung adenocarcinoma cells.
Main Methods:
- Label-free liquid chromatography-tandem mass spectrometry (LC-MS/MS) quantitative proteomics was used.
- Differential protein expression analysis was performed on A549DR cells (doxorubicin-resistant) versus A549 cells (parental).
- Bioinformatic analyses including KEGG pathway, Gene Ontology (GO), and STRING for protein-protein interaction (PPI) network analysis were conducted.
Main Results:
- Proteomics identified 146 upregulated and 129 downregulated proteins in A549DR cells.
- Upregulated pathways included metabolic pathways, cellular senescence, cell cycle, and p53 signaling.
- Downregulated pathways involved spliceosome, nucleotide metabolism, DNA replication, nucleotide excision repair, and nuclear-cytoplasmic transport.
- Key upregulated proteins with PPIs included CDK1, AKT2, SRC, STAT1, HDAC1, FDXR, FDX1, NPC1, ALDH2, GPx1, CDK4, and B2M.
Conclusions:
- The study identified several proteins and pathways implicated in acquired doxorubicin resistance.
- These proteins, including CDK1, AKT2, and SRC, represent potential therapeutic targets for overcoming chemoresistance.
- Further research into these targets could lead to novel strategies for managing drug-resistant lung adenocarcinoma.
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