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Microcystis abundance is predictable through ambient bacterial communities: A data-oriented approach.

Mingyeong Kang1, Dong-Kyun Kim2, Ve Van Le1

  • 1Cell Factory Research Center, Korea Research Institute of Bioscience and Biotechnology, 125 Gwahak-ro, Yuseong-gu, Daejeon, 34141, Republic of Korea; Department of Environmental Biotechnology, KRIBB School of Biotechnology, Korea University of Science and Technology (UST), 217 Gajeong-ro, Yuseong-gu, Daejeon, 34113, Republic of Korea.

Journal of Environmental Management
|August 10, 2024
PubMed
Summary

Incorporating bacterial community data significantly improves cyanobacterial harmful algal bloom (cyanoHAB) prediction models. This study highlights the crucial role of microbes alongside environmental factors for accurate cyanoHAB forecasting.

Keywords:
Amplicon sequence variantBacterial communityCyanobacterial harmful algal bloomsMicrocystisMultilayer perceptronPrediction model

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Area of Science:

  • Environmental microbiology
  • Aquatic ecology
  • Machine learning applications in environmental science

Background:

  • Increasing prevalence of cyanobacterial harmful algal blooms (cyanoHABs) necessitates improved prediction models.
  • Existing cyanoHAB models primarily rely on environmental data, often overlooking the significant influence of bacterial communities.
  • Understanding microbial interactions is key to advancing cyanoHAB prediction accuracy.

Purpose of the Study:

  • To develop and evaluate a machine learning model for predicting Microcystis dynamics using both bacterial community and environmental data.
  • To assess the relative importance of bacterial communities versus environmental factors in cyanoHAB prediction.
  • To identify key microbial players and environmental drivers influencing Microcystis blooms.

Main Methods:

  • Utilized a multilayer perceptron (MLP) machine learning model for prediction.
  • Integrated weekly water quality data with bacterial community data from Daechung Reservoir and Nakdong River.
  • Performed post-hoc analysis to determine the contribution of different factors and identified key microbial taxa.

Main Results:

  • The MLP model combining bacterial and environmental data achieved a higher R² (0.97) compared to environmental data alone (0.78).
  • Nitrogen sources were identified as more critical than phosphorus for Microcystis blooms.
  • The bacterial family Microscillaceae showed the strongest association with Microcystis dynamics in both MLP and MLR models.

Conclusions:

  • Bacterial community data significantly enhances the predictive power of cyanoHAB models.
  • Microbial community composition is a critical factor for understanding and predicting cyanoHABs.
  • This approach offers a pathway to more accurate and reliable cyanoHAB prediction by incorporating ambient bacterial data.