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Updated: Jun 17, 2025

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Volume Segmentation and Analysis of Biological Materials Using SuRVoS Super-region Volume Segmentation Workbench
Published on: August 23, 2017
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Long axial-range double-helix point spread functions for 3D volumetric super-resolution imaging.
Yuya Nakatani1, Scott Gaumer2, Yoav Shechtman3,4
1Department of Chemistry, Rice University, 6100 Main St, Houston, TX 77005, USA.
Biorxiv : the Preprint Server for Biology
|August 12, 2024
Summary
Long axial-range double-helix point spread functions simplify 3D super-resolution microscopy for whole cells. This advanced technique, single-molecule localization microscopy (SMLM), enables faster imaging and analysis without stitching slices.
Area of Science:
- Biophysics
- Optical Microscopy
- Nanotechnology
Background:
- Single-molecule localization microscopy (SMLM) achieves super-resolution imaging beyond light diffraction limits.
- Engineered point spread functions (PSFs) extend SMLM to 3D imaging, but challenges remain for thick samples like mammalian cells.
Purpose of the Study:
- To simplify 3D super-resolution imaging workflows in thick biological samples.
- To demonstrate the utility of long axial-range double-helix (DH)-PSFs for stitching-free volumetric imaging.
Main Methods:
- Experimental benchmarking of DH-PSF localization precision using fluorescent beads.
- 3D SMLM of mammalian cells (U-2 OS) using DNA-PAINT to image lamin B1.
- Application of a deep learning algorithm for localizing dense emitters.
Main Results:
- DH-PSFs were characterized for precision, resolution, and imaging speed.
- Successful 3D super-resolution imaging of the nuclear lamina protein lamin B1 in U-2 OS cells.
- Deep learning significantly enhanced imaging speed and resolution for dense emitters.
Conclusions:
- Long axial-range DH-PSFs enable stitching-free 3D super-resolution imaging of entire mammalian cells.
- The developed method simplifies experimental and analysis procedures for nanoscale structural information.
- This approach facilitates volumetric nanoscale imaging of complex biological structures.

