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Bayesian Lesion Estimation with a Structured Spike-and-Slab Prior.

Anna Menacher1, Thomas E Nichols2, Chris Holmes1

  • 1Department of Statistics, University of Oxford.

Journal of the American Statistical Association
|August 12, 2024
PubMed
Summary

We developed a scalable Bayesian model (BLESS) to analyze brain lesions from MRI scans. This method accurately models white matter damage in large populations, aiding research into aging and inflammatory diseases.

Keywords:
Bayesian bootstrapBrain imagingSpatial statisticsVariable selectionVariational inference

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Area of Science:

  • Neuroimaging
  • Statistical Modeling
  • Computational Biology

Background:

  • White matter lesions on T2-weighted MRI scans indicate neural demyelination and brain damage.
  • Population-level modeling of these lesions is crucial for understanding aging and inflammatory diseases.

Purpose of the Study:

  • To introduce a scalable hierarchical Bayesian spatial model (BLESS) for analyzing binary neuroimaging data.
  • To enable accurate modeling of brain lesions at a population level.

Main Methods:

  • Developed BLESS, a Bayesian spatial model using spike-and-slab priors for binary responses.
  • Employed mean-field variational inference with dynamic posterior exploration for scalability.
  • Incorporated Bayesian bootstrap for accurate posterior variance estimation and cluster-based statistics.

Main Results:

  • The BLESS model scales effectively to large sample sizes (e.g., 40,000 subjects).
  • Achieved accurate uncertainty quantification and generated novel cluster size imaging statistics.
  • Validated through simulations and application to UK Biobank data.

Conclusions:

  • BLESS provides a robust and scalable framework for analyzing population-level brain lesion data.
  • The model facilitates advanced imaging statistics for enhanced understanding of neurological conditions.
  • Demonstrated utility in large-scale studies like the UK Biobank.