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Updated: Jun 17, 2025

Single-Cell Factor Localization on Chromatin using Ultra-Low Input Cleavage Under Targets and Release using Nuclease
Published on: February 1, 2022
Cleavage Under Targets and Release Using Nuclease (CUT&RUN) of Epigenetic Regulators
Andrew D McCray1,2, Xiaofeng Wang3,4
1Department of Molecular & Systems Biology, Dartmouth College, Lebanon, NH, USA.
Abstract:
Chromatin immunoprecipitation followed by sequencing (ChIP-Seq) allows for the identification of genomic targeting of DNA-binding proteins. Cleavage Under Targets and Release Using Nuclease (CUT&RUN) modifies this process by including a nuclease to digest DNA around a protein of interest. The result is a higher signal-to-noise ratio and decreased required starting material. This allows for high-fidelity sequence identification from as few as 500 cells, enabling chromatin profiling of precious tissue samples or primary cell types, as well as less abundant chromatin-binding proteins: all at significantly increased throughput.
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