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Updated: Jun 30, 2026

Enhanced Reduced Representation Bisulfite Sequencing for Assessment of DNA Methylation at Base Pair Resolution
Published on: February 24, 2015
NMR metabolomics-guided DNA methylation mortality predictors.
Daniele Bizzarri1, Marcel J T Reinders2, Lieke Kuiper3
1Molecular Epidemiology, Department of Biomedical Data Sciences, Leiden University Medical Center, Leiden, the Netherlands; Leiden Computational Biology Center, Department of Biomedical Data Sciences, Leiden University Medical Center, Leiden, the Netherlands; Delft Bioinformatics Lab, TU Delft, Delft, the Netherlands.
Researchers developed DNA methylation predictors for blood metabolites, identifying signals linked to mortality. These new predictors, combined with existing epigenetic clocks, offer valuable insights into aging and mortality risk.
Area of Science:
- Biomarkers
- Genomics
- Metabolomics
Background:
- 1H-NMR metabolomics and DNA methylation are known age-related mortality biomarkers.
- These biomarkers provide independent signals for mortality and frailty.
Purpose of the Study:
- To investigate if metabolomic mortality signals can guide the development of DNA methylation-based mortality predictors.
- To leverage multi-omics data from population studies to build novel mortality predictors.
Main Methods:
- Trained DNA methylation-based surrogates for 64 metabolomic analytes using multi-omics data from 5238 individuals.
- Utilized DNA methylation assays to reconstruct specific metabolic analytes and a known mortality risk score (MetaboHealth).
Main Results:
- Accurate reconstruction of analytes related to inflammation, fluid balance, and lipid metabolism.
- Sixteen derived surrogates, including MetaboHealth, showed significant independent associations with mortality.
- MetaboHealth surrogate was accurately reconstructed from DNA methylation data.
Conclusions:
- Metabolic analyte-derived surrogates derived from DNA methylation show potential as valuable mortality signals.
- These surrogates, when added to epigenetic clocks like GrimAge, enhance mortality prediction.
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