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Evolving dual-trait EPSP synthase variants using a synthetic yeast selection system.

Kevin B Reed1, Wantae Kim1, Hongyuan Lu1

  • 1McKetta Department of Chemical Engineering, The University of Texas at Austin, Austin, TX 78712.

Proceedings of the National Academy of Sciences of the United States of America
|August 19, 2024
PubMed
Summary

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This summary is machine-generated.

Researchers developed a synthetic yeast system to evolve 5-enolpyruvylshikimate-3-phosphate synthase (EPSPS) for enhanced glyphosate tolerance and catalytic efficiency. A single round of evolution yielded a mutant with robust herbicide resistance and improved enzyme function.

Area of Science:

  • Biochemistry
  • Plant Science
  • Synthetic Biology

Background:

  • 5-enolpyruvylshikimate-3-phosphate synthase (EPSPS) is crucial for aromatic amino acid synthesis in plants and is the target of glyphosate herbicide.
  • Existing glyphosate-resistant EPSPS variants often exhibit reduced catalytic efficiency, necessitating new variants with dual-trait improvements.

Purpose of the Study:

  • To establish a synthetic yeast system for rapid evolution of EPSPS with both high glyphosate tolerance and catalytic efficiency.
  • To identify novel EPSPS mutants that overcome the typical trade-off between herbicide resistance and enzyme performance.

Main Methods:

  • A synthetic yeast system was created to study and evolve heterologous EPSP synthases.
  • The system was validated using known EPSPS variants to confirm recapitulation of plant growth characteristics under glyphosate stress.
Keywords:
EPSPSdirected evolutionglyphosatesynthetic biologyyeast

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  • Mutagenesis libraries were screened under strong dual-trait selection pressure.
  • Main Results:

    • The synthetic yeast system successfully recapitulated plant growth responses to glyphosate.
    • A single round of evolution under dual-trait selection pressure identified a superior EPSPS mutant.
    • The evolved mutant demonstrated robust glyphosate tolerance (Ki ~1 mM) and a ~2.5-fold increase in enzymatic efficiency compared to the starting enzyme.
    • Crystal structures revealed insights into the mutations conferring improved dual traits.

    Conclusions:

    • The developed synthetic yeast platform is effective for evolving EPSPS with improved glyphosate resistance and catalytic efficiency.
    • Novel EPSPS mutants were identified with the potential to outperform existing resistant variants in whole-plant applications.
    • This platform facilitates the exploration of the complex relationship between glyphosate resistance and enzymatic efficiency in EPSPS.