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Updated: Jun 14, 2025

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A Gnotobiotic System for Studying Microbiome Assembly in the Phyllosphere and in Vegetable Fermentation
Published on: June 3, 2020
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Leaf age structures phyllosphere microbial communities in the field and greenhouse
Julie K Geyer1,2, Rita L Grunberg1,3, Jeremy Wang2
1Department of Biology, University of North Carolina at Chapel Hill, Chapel Hill, NC, United States.
Frontiers in Microbiology
|August 29, 2024
Summary
Leaf age significantly impacts fungal and bacterial communities, revealing microbial shifts over short time scales. This study explores leaf microbiome dynamics in response to host aging.
Area of Science:
- Microbiology
- Plant Science
- Ecology
Background:
- Leaf microbiome structure influences host fitness and responds to environmental factors.
- Limited research exists on host age effects on microbial communities over short timescales relevant to microbes.
Purpose of the Study:
- To investigate how host age influences fungal and bacterial leaf microbiome composition and diversity over short durations.
- To compare microbiome changes across different leaf ages in both field and greenhouse settings.
Main Methods:
- Utilized next-generation sequencing to characterize phyllosphere fungal and bacterial communities.
- Conducted independent field and greenhouse studies examining leaf age-related microbiome shifts.
- Analyzed fungal and bacterial communities based on relative leaf age (field) and absolute leaf age (greenhouse).
Main Results:
- Fungal communities showed susceptibility to change with leaf aging, with shifts in fungal taxa diversity observed in both field and greenhouse studies.
- Increased fungal taxa diversity was noted with increasing leaf age in the greenhouse experiment.
- Bacterial communities in the field exhibited changes in diversity, composition, and relative abundance of dominant taxa as leaves aged.
Conclusions:
- Leaf age is a critical factor modulating fungal and bacterial leaf microbiome structure over short timescales.
- Findings provide a basis for future research into fine-scale interactions among microbial taxa on plant leaves.
- The study highlights the dynamic nature of the leaf microbiome in response to host ontogeny.

