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Published on: July 25, 2020
AI-powered omics-based drug pair discovery for pyroptosis therapy targeting triple-negative breast cancer
Boshu Ouyang1,2, Caihua Shan3, Shun Shen4
1Department of Pharmaceutics, School of Pharmacy, Key Laboratory of Smart Drug Delivery, Ministry of Education, Fudan University, Shanghai, 201203, P. R. China.
Abstract:
Due to low success rates and long cycles of traditional drug development, the clinical tendency is to apply omics techniques to reveal patient-level disease characteristics and individualized responses to treatment. However, the heterogeneous form of data and uneven distribution of targets make drug discovery and precision medicine a non-trivial task. This study takes pyroptosis therapy for triple-negative breast cancer (TNBC) as a paradigm and uses data mining of a large TNBC cohort and drug databases to establish a biofactor-regulated neural network for rapidly screening and optimizing compound pyroptosis drug pairs. Subsequently, biomimetic nanococrystals are prepared using the preferred combination of mitoxantrone and gambogic acid for rational drug delivery. The unique mechanism of obtained nanococrystals regulating pyroptosis genes through ribosomal stress and triggering pyroptosis cascade immune effects are revealed in TNBC models. In this work, a target omics-based intelligent compound drug discovery framework explores an innovative drug development paradigm, which repurposes existing drugs and enables precise treatment of refractory diseases.
Insights
This study introduces an AI-driven framework for discovering novel pyroptosis therapies for triple-negative breast cancer (TNBC). It efficiently screens drug combinations, optimizing treatment for refractory diseases.
Area of Science:
- Biomedical Engineering
- Computational Biology
- Oncology
Background:
- Traditional drug development faces low success rates and long cycles.
- Omics data offers potential for personalized medicine but presents challenges in data heterogeneity and target distribution.
- Triple-negative breast cancer (TNBC) remains a challenging disease with limited treatment options.
Purpose of the Study:
- To develop an intelligent drug discovery framework for pyroptosis therapy in TNBC.
- To rapidly screen and optimize compound drug pairs for precision medicine.
- To establish a novel drug development paradigm for refractory diseases.
Main Methods:
- Data mining of a large TNBC cohort and drug databases.
- Establishment of a biofactor-regulated neural network for drug pair screening.
- Preparation of biomimetic nanococrystals for targeted drug delivery.
- Investigation of nanococrystal mechanisms involving ribosomal stress and pyroptosis induction.
Main Results:
- Identification of an optimized drug combination (mitoxantrone and gambogic acid) for pyroptosis therapy.
- Development of biomimetic nanococrystals for effective drug delivery in TNBC models.
- Elucidation of the mechanism by which nanococrystals regulate pyroptosis genes and immune effects.
- Demonstration of an innovative drug repurposing strategy for refractory cancers.
Conclusions:
- The developed omics-based intelligent framework enables rapid and precise drug discovery.
- This approach repurposes existing drugs for effective treatment of refractory diseases like TNBC.
- The study highlights a promising new paradigm for targeted cancer therapy and precision medicine.
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