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A machine learning potential construction based on radial distribution function sampling.

Natsuki Watanabe1,2, Yuta Hori1, Hiroki Sugisawa3

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This study introduces radial distribution function (RDF)-based data sampling to improve machine learning potentials (MLPs). This method enhances molecular dynamics (MD) simulations by ensuring accurate reference data, preventing unphysical behaviors.

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Area of Science:

  • Computational Chemistry
  • Materials Science
  • Machine Learning

Background:

  • Accurate reference data is vital for constructing reliable machine learning potentials (MLPs).
  • Insufficient local configurations in training data can cause unphysical behavior in MLP-based molecular dynamics (MLP-MD) simulations.

Purpose of the Study:

  • To develop an on-the-fly sampling method for reference data to enhance MLP construction.
  • To improve the accuracy and robustness of MLPs for molecular dynamics simulations, particularly for water systems.

Main Methods:

  • Proposed a novel radial distribution function (RDF)-based data sampling technique for on-the-fly reference data collection.
  • Detected and extracted anomalous configurations from MLP-MD trajectories by analyzing RDF shapes.
  • Integrated these structures into the reference dataset to refine the MLP.

Main Results:

  • MLP-MD simulations utilizing the new sampling method produced trajectories with physically realistic features, including accurate RDF shapes and angle distributions.
  • The refined MLPs demonstrated robustness, accurately simulating bulk water systems from molecular cluster data.
  • Unphysical behaviors observed in simulations without the RDF-based sampling were effectively mitigated.

Conclusions:

  • The RDF-based data sampling approach is a highly effective strategy for constructing accurate and robust MLPs.
  • This method enables reliable extrapolation from small molecular systems to larger, bulk systems without requiring specialized expertise.
  • The technique significantly improves the quality of MLP-MD simulations, aligning results with ab initio calculations.