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Published on: December 27, 2024
Phosphorylation of the DNA damage repair factor 53BP1 by ATM kinase controls neurodevelopmental programs in cortical
Bitna Lim1, Yurika Matsui1, Seunghyun Jung1
1Department of Developmental Neurobiology, St Jude Children's Research Hospital, Memphis, Tennessee, United States of America.
Abstract:
53BP1 is a well-established DNA damage repair factor that has recently emerged to critically regulate gene expression for tumor suppression and neural development. However, its precise function and regulatory mechanisms remain unclear. Here, we showed that phosphorylation of 53BP1 at serine 25 by ATM is required for neural progenitor cell proliferation and neuronal differentiation in cortical brain organoids. Dynamic phosphorylation of 53BP1-serine 25 controls 53BP1 target genes governing neuronal differentiation and function, cellular response to stress, and apoptosis. Mechanistically, ATM and RNF168 govern 53BP1's binding to gene loci to directly affect gene regulation, especially at genes for neuronal differentiation and maturation. 53BP1 serine 25 phosphorylation effectively impedes its binding to bivalent or H3K27me3-occupied promoters, especially at genes regulating H3K4 methylation, neuronal functions, and cell proliferation. Beyond 53BP1, ATM-dependent phosphorylation displays wide-ranging effects, regulating factors in neuronal differentiation, cytoskeleton, p53 regulation, as well as key signaling pathways such as ATM, BDNF, and WNT during cortical organoid differentiation. Together, our data suggest that the interplay between 53BP1 and ATM orchestrates essential genetic programs for cell morphogenesis, tissue organization, and developmental pathways crucial for human cortical development.
Insights
Phosphorylation of 53BP1 by ATM is crucial for neural progenitor cell proliferation and neuronal differentiation. This process regulates key genes involved in brain development and cellular responses.
Area of Science:
- Molecular Biology
- Neuroscience
- Genetics
Background:
- 53BP1 is a known DNA damage repair factor with emerging roles in gene expression, tumor suppression, and neural development.
- The exact functions and regulatory mechanisms of 53BP1 in these processes are not fully understood.
Purpose of the Study:
- To investigate the role of 53BP1 phosphorylation at serine 25 by ATM in neural progenitor cell proliferation and neuronal differentiation.
- To elucidate the molecular mechanisms by which 53BP1 regulates gene expression during cortical development.
Main Methods:
- Utilized cortical brain organoids to study neural progenitor cell proliferation and neuronal differentiation.
- Investigated the phosphorylation status of 53BP1 at serine 25 using ATM.
- Analyzed the binding of 53BP1 to gene loci and its impact on gene regulation, particularly in genes related to neuronal development and function.
Main Results:
- Phosphorylation of 53BP1 at serine 25 by ATM is essential for neural progenitor cell proliferation and neuronal differentiation in cortical organoids.
- Dynamic phosphorylation of 53BP1-serine 25 controls target genes involved in neuronal differentiation, stress response, and apoptosis.
- ATM and RNF168 regulate 53BP1 binding to gene loci, directly impacting gene expression, especially for genes crucial for neuronal maturation.
- 53BP1 serine 25 phosphorylation inhibits its binding to specific promoter regions, affecting genes related to H3K4 methylation and neuronal functions.
- ATM-dependent phosphorylation influences a broad range of factors in neuronal differentiation, cytoskeleton dynamics, p53 regulation, and signaling pathways like BDNF and WNT.
Conclusions:
- The interplay between 53BP1 and ATM orchestrates critical genetic programs for human cortical development, including cell morphogenesis, tissue organization, and developmental pathways.
- ATM-mediated phosphorylation of 53BP1 is a key regulator of gene expression essential for neurodevelopmental processes.
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